Thiomicrorhabdus lithotrophica: NR989_03490
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Entry
NR989_03490 CDS
T09486
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
tlh
Thiomicrorhabdus lithotrophica
Pathway
tlh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tlh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NR989_03490 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tlh03019
]
NR989_03490 (rnr)
03016 Transfer RNA biogenesis [BR:
tlh03016
]
NR989_03490 (rnr)
Enzymes [BR:
tlh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NR989_03490 (rnr)
Messenger RNA biogenesis [BR:
tlh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NR989_03490 (rnr)
Transfer RNA biogenesis [BR:
tlh03016
]
Prokaryotic type
tRNA degradation factors
NR989_03490 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
WEJ63329
UniProt:
A0ABY8CBH4
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Position
772035..774368
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AA seq
777 aa
AA seq
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MSKESTSGQQDPHAQREADKYENPIPSREFILEALEEAQKPLRLYQVAKIVDVDEDDEER
FEALSRRMKAMVRDGQLIRNRRGAFGLLKKMDLIKGRVLGHPDGYGFLVPDEGGKDLFLS
EKEMHKVLHGDIVIASVIGEDRRGRQEGAIVEVTEHNTTQVLGRLNHEDGLSWVRPNNNR
LTQDIFIPKDGLLEAKEEQVVLVEVLHQPTARSGPIGKIVDVVGDYMSAGMEIESAIHAY
GIPNSWNEELEAELAKIPDEVIESDLKDRKDLRGLQLVTIDGSDTKDFDDAVFAKRRKNG
WRLVVAIADVSHYVKPGTELDKEAFKRGNSVYFPQRVVPMLPSKLSDGLCSLNPHVDRLC
MVADLTITEDGKLEKSQFYQAVMNSKARLTYTQVHEMLTDNKSKYREEFADQLSNVEELY
NLYKVLKVARAERGALEFETTETRMVFDENRKIQEIVPVYRNDAHKLIEECMLMANVATA
RYLKWHKMPILYRVHEKPLEERLKNLRTFLGDFGLTLEGGDEPTAHDYAKVSEQVAGEPH
EHLVQTVLLRSMNQAVYQPENKGHFGLNYEHYAHFTSPIRRYPDLLIHRALRHVWTKKGV
ENFDYNESDMVDLGQHCSDTERRADEATRDSVTFLKCEFLSHRIGEEYEAVVSAATNFGL
FVELQPLFVEGLVHITELGEDYFHYDNARHCLKGERTGKVYRLGDRIKVQVAQVNLDDRK
VDLRFIESLTEHAEPEATGSDIEESSTDEQSSDEAKPARKKRYYRKKKRSSSKPKAD
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaaagaaagtacatcgggtcagcaggatccacatgcacagcgtgaagctgataag
tatgaaaacccaatccctagtcgtgagtttattttagaagcattagaagaagctcagaag
cctttaaggctctatcaagtggctaaaattgtcgacgtagatgaagacgatgaagaacgt
tttgaagcattgtctcgccgaatgaaagcaatggtgcgtgacggtcaattaatccgtaat
cgtcgaggcgcatttggtttgttaaagaagatggatcttatcaagggacgtgttttaggg
catcctgatggatatggttttttagtgcctgatgagggtggtaaagacttgtttctttct
gaaaaagagatgcataaagtgttacatggcgatattgttatcgcttctgtcattggtgaa
gatcgtcgtggccgtcaagagggtgcgattgttgaagttactgagcataatacaactcaa
gtattaggtcgcttgaaccatgaagatggtttgtcatgggttcgtcctaacaataatcgt
cttacccaagacatttttatccctaaagatggtttgttagaagcaaaagaagagcaagtt
gttcttgttgaggttcttcatcagcctacagcgcgttcagggccaattggtaaaatcgtc
gatgtggttggtgattacatgtccgctggtatggaaatcgaatcagctatccacgcttac
ggtattccaaattcatggaatgaagagttggaagctgaattagcaaaaattcctgatgaa
gtgattgagtcagacctgaaagatcgtaaggatttacgtgggcttcagttggtaacgatt
gatggttcagatactaaagactttgacgatgcggtgtttgctaaacgacgtaagaatggt
tggcgtttagttgtggctattgctgatgtctctcattatgttaaacctggaacagagcta
gataaagaagctttcaaacgcggtaattctgtttacttccctcagcgtgttgtaccaatg
ctaccttctaagttatcagatggtctttgctctttaaatccgcacgttgatcgtttgtgt
atggtggctgatttaacgattaccgaagatggtaaattagaaaagagtcagttctatcaa
gccgtaatgaactccaaagcgcgtttgacctatactcaggttcacgagatgttgacagat
aacaagtctaaataccgtgaagagtttgcagatcaactatcaaatgtagaagagctttat
aacttatataaagtgttaaaagtcgctcgtgcagagcgtggtgctttagagtttgaaacc
actgaaacacgtatggtgtttgatgagaaccgtaagattcaagaaattgtaccagtttac
cgtaatgacgctcataagttgattgaagagtgtatgttaatggctaacgttgcaacagca
cgttatctaaaatggcataagatgccaatattgtatcgagttcatgaaaagcctctagaa
gagcgtttgaagaacttaagaaccttcttaggtgactttggattaacgcttgaaggtggt
gatgagcctacggctcatgattacgctaaagtatctgaacaagttgctggcgaaccacat
gaacacttagtgcagactgtattattgagaagtatgaatcaagctgtgtatcagcctgaa
aataaaggtcattttggtttgaattatgagcattatgctcactttacctctccgattcgt
cgttaccctgatttgcttattcaccgtgcgcttcgtcatgtatggactaaaaagggtgtt
gagaactttgactacaatgaatctgatatggttgatttgggtcagcactgttctgatacc
gaaagacgtgcagatgaagcgacacgtgactcagtaactttcttgaaatgtgaattccta
tctcaccgcattggtgaagagtatgaagctgtggtttcagccgcaacaaactttggtttg
tttgttgaattacaaccattgtttgttgaaggtttagtgcacattactgagctgggtgaa
gattacttccattatgataatgctcgtcactgcttgaaaggtgagcgtactggcaaggtt
tatcgattaggtgacagaattaaagtgcaagttgcgcaagtaaacttggatgatcgtaag
gtagatttacgtttcattgaaagcttaaccgagcatgctgagcctgaagcaacgggttct
gatattgaggaatcttctactgatgaacagtcttcagatgaagctaaaccagcacgtaaa
aaacgttattatcgtaaaaagaagcgttcaagctcaaagcctaaggccgattaa
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