Thiomicrorhabdus lithotrophica: NR989_04025
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Entry
NR989_04025 CDS
T09486
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tlh
Thiomicrorhabdus lithotrophica
Pathway
tlh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tlh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NR989_04025 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tlh03019
]
NR989_04025 (rne)
03009 Ribosome biogenesis [BR:
tlh03009
]
NR989_04025 (rne)
Enzymes [BR:
tlh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NR989_04025 (rne)
Messenger RNA biogenesis [BR:
tlh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NR989_04025 (rne)
Ribosome biogenesis [BR:
tlh03009
]
Prokaryotic type
rRNA processing factors
NR989_04025 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WEJ63429
LinkDB
All DBs
Position
complement(885486..887999)
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AA seq
837 aa
AA seq
DB search
MKRMLINATQAEETRIALVDGQTLYDLDVETPHHQKKKANVYKGKITRIEPSLEAAFVDY
GSERHGFLPFKEIAEEYFPKKEAGSGRPGIKDVLKEGQEIIVQVQKEERGNKGAALTTQI
TLAGPYVVMMPNNPKAGGISRRIEGDERTDIRDTLRDLETPEGMGLIIRTAGVGKNTEEL
QWGVNYLIQLWDAIKAASVEKEAPFLIHQESDIVILAIRDYLRQDIGEIIIDNMEVFHKA
RDFIQHVMPQQVYKVKPYQDTIPLFTRFQIESQIESAYQREVTLPSGGSIVIDITEALTA
IDINSSRATKGTDIEDTAFNTNMEAACEIARQLRLRDLGGLVVIDFIDMHSNRHQREVEN
KMREAVKSDRARVQIGKISRFGLLEMSRQRLRPSIEESTQIVCPRCHGVGVIRGVESLGL
SILRLLEEESMKENTRRVTVQLPVDVATFLLNEKRNQIIKIEDRHSLHILIVPNEHLETP
QYVMERTRLGEESPQNASYEIKEIAMPETELKTEPTKEAKKEEPAVQNLQPTAPPPAATA
PVQTQASTEQKPGLFSRVWKALFSKEEPEEEQVKPRSRNNNTRRNNNSRRRNNEGRGDNR
NRNRNNRNKRPQENQAENQQNDQNQEKARKPSNRRNNRNRRDREESSNVDKKAQNDVPLA
TEETSTETNIAATETPKAQEGKGRRSGGKRRSRYNSRSYNSRRRAPAGAAEMSIDSLAPT
TEQPVASAPVETTENITAEVVVQEVSTQENTPQEVINPVALTEETNIEPTTPTESVSEQA
EDNSSDINGNVAESSDEKPKPRRRSRPRKPRSSSTRTKKATSETTEAPAAAKEGSED
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaattaatgcgactcaagcagaagagactcgcattgccctagtagat
ggtcaaaccctctacgacctagatgtggaaacaccacatcaccaaaagaaaaaagccaat
gtatacaaaggtaaaatcactcgaatcgaacctagtttagaagccgcgtttgtcgattac
ggttctgaacgccacggttttttacccttcaaagaaattgccgaagaatacttccctaaa
aaagaagcaggttctggtcgtccaggcatcaaagatgttttgaaagaaggacaagaaatt
attgttcaagttcaaaaagaagaacgtggcaataaaggtgcagccttaacaacccaaatc
accttagcaggtccttatgtcgtaatgatgccaaacaaccctaaagcaggtggtatctca
cgtcgcattgaaggtgatgagcgtacagatattcgcgacaccttacgtgacttagaaaca
cccgaaggtatgggattaattatccgtactgcaggtgtaggcaaaaatacagaagagtta
caatggggtgttaactaccttattcaactttgggatgcaatcaaagccgcctcggtagaa
aaagaagcgcctttcttgattcaccaagaatcagacatcgttattttggcaatccgcgat
tacctgcgccaagacattggtgaaatcattatcgacaacatggaagtattccataaagca
cgtgatttcattcaacatgtcatgccacagcaagtttacaaagtaaaaccgtatcaagat
acgattcctttatttactcgtttccagattgaatctcaaattgaatcagcctaccagcga
gaagttaccctgccttctggtgggtcgattgtgattgatatcacagaagccctaaccgcg
atcgacatcaactcaagccgagccactaaagggacggatattgaagataccgctttcaac
accaacatggaagcggcctgcgaaatcgctcgtcagctacgtcttcgtgacttaggcggc
ctagtagtaatcgactttatcgatatgcactctaaccgtcatcaacgtgaagttgaaaat
aaaatgcgtgaagcagttaaatccgatcgcgcacgtgtacaaattggtaagatttcacgc
tttggccttttagagatgtctcgccaaagactccgtccttcgattgaagaatcaacacaa
attgtctgccctcgctgtcacggtgtaggtgttattcgtggtgttgaatctttaggtctt
tctatcttgcgtctgcttgaagaagaaagcatgaaagagaatactcgtcgcgtaacggtt
caattacctgttgatgtcgctacattcttattaaatgagaaacgcaatcaaatcatcaag
attgaggatcgtcatagcctacacattcttattgttcctaatgaacatctagaaacacca
cagtatgttatggaacgaacacgtctaggagaagaatcaccgcaaaatgcaagctatgaa
attaaagaaatagccatgcctgaaacagagttaaaaactgaaccaaccaaagaagctaaa
aaagaagagcctgcagtgcaaaatttgcaaccaactgcgcctcctccggcagctactgcg
ccagttcaaactcaagcaagcactgaacaaaaaccaggtttattttcccgtgtttggaag
gctttatttagcaaagaagagcccgaagaagaacaggtaaaaccacgcagccgcaataac
aatacgcgtcgtaacaataacagccgtcgtcgcaataatgaaggccgtggtgataaccgt
aatcgtaaccgcaataatcgtaataagcgccctcaagagaaccaagctgaaaaccagcaa
aatgatcaaaatcaagagaaagcgcgtaaaccaagtaatagacgtaataatcgtaaccgt
cgtgatagagaagaatcatcgaacgttgataaaaaagcacagaacgatgtgcctttagca
actgaagaaacttctacagaaacgaatattgcagctactgaaacgcctaaagcacaggaa
ggtaaaggccgtcgcagtggagggaaacgccgaagtcgatacaacagtcgtagctacaac
agccgtagacgcgctccagcaggtgctgcagagatgtcaattgactctcttgcccctact
acagaacaacccgttgccagtgctcctgttgaaactacagaaaacatcactgcggaagtt
gtggtacaagaggtttcaactcaagagaacactcctcaagaggtgattaatccagttgct
ctaacagaagaaaccaacattgaaccaacgactccaacagaatctgttagcgaacaagct
gaagataattcttcggatataaacggaaatgttgcagaaagtagcgatgagaagccaaaa
ccaagaagacgttcacgtccacgtaaaccacgctcttctagtacacgcactaaaaaagca
acttcagaaacaactgaagcgccagctgctgcaaaagaaggttcagaagactaa
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