Thiomicrorhabdus lithotrophica: NR989_04105
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Entry
NR989_04105 CDS
T09486
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
tlh
Thiomicrorhabdus lithotrophica
Pathway
tlh03030
DNA replication
tlh03430
Mismatch repair
tlh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tlh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NR989_04105 (holB)
03430 Mismatch repair
NR989_04105 (holB)
03440 Homologous recombination
NR989_04105 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tlh03032
]
NR989_04105 (holB)
03400 DNA repair and recombination proteins [BR:
tlh03400
]
NR989_04105 (holB)
Enzymes [BR:
tlh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NR989_04105 (holB)
DNA replication proteins [BR:
tlh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NR989_04105 (holB)
DNA repair and recombination proteins [BR:
tlh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NR989_04105 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA
HolB_lid
Motif
Other DBs
NCBI-ProteinID:
WEJ63443
LinkDB
All DBs
Position
902059..903084
Genome browser
AA seq
341 aa
AA seq
DB search
MSQTDPVYQAYPWLSPQWNQWQQLSGRLGHAYLLSGPKGIGLHAFVNAVAQAVLCKQPQN
GQACGQCTSCHLFVTQQHPDFSQLRRLEDKKDITVDQVRSLIYKLNETSHQGGYKVTWID
GIEYLNQSAFNALLKSLEEPAQRTLFLLTTHQVDRLPATIKSRCQQMNFTPPAMPDAISW
LHNQAPQVDEALIKRALRLNWGAPIQALDWIQAGMFDEDNQWNNDLKQIQSGRKTASQSV
TEWLKWQQPERVFDYFYQWSVSAVRSVMYQTNPDAPVPSNNQVQNWLRFQQAVLTAKQNW
LANANKELLLESLCLEWLSIQQSEEPLETVFQSRIQKGKLA
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
gtgagtcaaacagaccccgtttatcaagcctacccatggttaagtccacagtggaatcaa
tggcagcagttgtcaggtcgtctaggtcatgcctatttattgtctggacctaaggggatt
ggtctacatgcttttgtaaacgctgtggcgcaggccgttttatgtaaacagccgcagaat
ggacaagcatgtggacaatgtactagttgtcatttatttgttactcaacaacacccggat
ttttctcaactaaggcggttagaagataaaaaagacattacggttgatcaggtcagaagc
ctaatctacaagcttaacgaaacctctcaccaaggtggttacaaggttacgtggattgat
ggcattgaatacttgaatcagtccgcctttaatgcgcttttaaagtcccttgaagaacct
gcacaacgaaccttatttttactcaccacccatcaagtggatagactgcctgcaacaata
aaaagtcgttgtcagcaaatgaactttacgcctcctgctatgcccgatgctatcagctgg
ttgcataatcaagccccgcaagtggatgaggctttgattaagcgtgctttacgtttaaat
tggggtgcgccaattcaagctctagattggattcaagcaggcatgtttgatgaagacaat
caatggaacaatgatttaaaacaaattcaatcaggacgtaaaaccgcttcacaatcggtt
actgaatggcttaaatggcagcaaccagagcgtgtatttgattatttttatcagtggagt
gtttcagcagttcgctcggttatgtatcaaaccaatccagacgcacctgtgccatctaat
aaccaagtacaaaactggttacgttttcagcaagcggtgttaacagcaaagcaaaactgg
ttagcgaatgcgaataaagaactgcttctagaaagtttatgtctagagtggttaagcatt
cagcaaagtgaagaaccattagaaaccgtatttcagtcaagaattcaaaaaggaaaatta
gcgtga
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