Thiomicrorhabdus lithotrophica: NR989_05670
Help
Entry
NR989_05670 CDS
T09486
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
tlh
Thiomicrorhabdus lithotrophica
Pathway
tlh02020
Two-component system
tlh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tlh00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NR989_05670
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NR989_05670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tlh03021
]
NR989_05670
Transcription machinery [BR:
tlh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NR989_05670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Gp6_2nd
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
WEJ63737
UniProt:
A0ABY8CEQ6
LinkDB
All DBs
Position
complement(1237739..1239244)
Genome browser
AA seq
501 aa
AA seq
DB search
MALMPGLQINMGQQLKLTPQLQQSIKILQYSALEVQQTIETTLETNFMLEMDEGFDQEIE
ENEELENQEAKNDSTEKESTPVDEAPLDINQSETIKDDMEVDCDWEDVYSDHTPSSSSQS
SEEYASAETYTASEESLHDHLYWQSEIYPWADDESVIASYIIDDINEEGYLSSSLEDITL
SISQNEPDVIVSVAEVEAVLMVIQQFEPTGVGARTVQESLLLQLATHPKTPYVVTAIQLI
NENFDWLSFHDSKRIKKLYGLDDEQLGQLIKLIQTLNPRPGRDYSSTQSEVIVPDLRLRR
VKTGWLVELNANAFPRLSINSAYIELASSLKNDEQSKQIKEQLIEAKGLIKSIHSRGETL
LRVGKFIVQKQEQFFEEGEHAMQPLVLREVADHLELHESTISRATNQKYIQTPRGTFELK
YFFSTGVSQYGSADQSAIAIKAHIKELIDAEDPKKPLSDSKLMSLLEEKEIVVARRTIAK
YREALKIPSSSERKKLNQFKF
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggcactaatgcccggcttacaaattaatatgggtcaacagttaaaactgacccctcaa
ttacagcagtcgatcaaaatattgcagtattctgctttagaagttcagcaaacaattgaa
acaacactcgagaccaacttcatgctagaaatggatgaaggctttgatcaagaaattgaa
gaaaatgaagagctcgaaaatcaagaagctaagaatgacagtactgaaaaagaaagcaca
ccagttgatgaagcgccattagatattaaccaatcagaaacaatcaaagatgacatggaa
gtcgattgtgattgggaagatgtttattcagaccataccccctcttcctcttcgcaaagc
tctgaagagtatgccagcgcagaaacttacactgcgtctgaagaaagcctacatgatcat
ttatattggcagtctgagatttacccttgggcggatgatgagtctgtaatcgcttcttac
atcattgatgatattaatgaagaaggatatttatcgagtagcttagaggatattaccctt
tcaatctcccaaaatgaacctgatgttatcgtttcagttgcggaggttgaagccgtgcta
atggttatacaacaatttgaaccgacgggtgttggcgctaggactgttcaagaaagccta
ctactacagctggctacacatcctaaaacaccttatgttgttactgccattcaattaatt
aacgaaaacttcgattggttatctttccacgactctaaacgcattaaaaaactatatggt
ttagatgatgagcaacttgggcagttgattaagttaattcaaaccttaaacccaagacca
gggcgtgattattcaagtacacaatctgaagtcatcgtgcctgatcttaggttgcgaaga
gttaaaacgggttggctagttgagcttaatgcgaatgcatttccccgtttatcaataaat
tcagcctacattgaattagcaagtagcttaaaaaatgatgaacaatctaagcaaatcaaa
gaacaacttattgaagctaaaggccttattaaaagcatacatagcagaggcgaaacttta
ttgcgtgttggtaaatttattgtccaaaagcaagaacaattctttgaagaaggtgaacat
gcaatgcaacctttagttctaagagaagttgctgaccatttggagttacatgaatcgact
atttcacgtgccactaaccaaaaatatatacaaacgcctcgtggtacctttgaacttaaa
tacttcttctctactggtgttagtcaatatggtagcgctgatcaatcagccattgctatc
aaggcacacatcaaagaacttattgatgcggaagaccctaaaaaaccgctaagtgatagt
aaactgatgagtttattggaggaaaaagagattgtagttgctcgaagaaccattgctaag
taccgagaagctttaaaaattccatcttctagtgagcgaaagaaacttaatcaatttaag
ttctaa
DBGET
integrated database retrieval system
