Thiomicrorhabdus lithotrophica: NR989_10135
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Entry
NR989_10135 CDS
T09486
Name
(GenBank) DEAD/DEAH box helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
tlh
Thiomicrorhabdus lithotrophica
Brite
KEGG Orthology (KO) [BR:
tlh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tlh03009
]
NR989_10135
Enzymes [BR:
tlh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NR989_10135
Ribosome biogenesis [BR:
tlh03009
]
Prokaryotic type
rRNA helicases
NR989_10135
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
UTP25_NTPase-like
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WEJ62365
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All DBs
Position
2156474..2157709
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AA seq
411 aa
AA seq
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MTFEELDLDPALLSAIEQQKYHKPTPIQEAAIPILMERQDILAGAATGTGKTAAFVLPAL
QFLLDEPERSNHPRVLILAPTRELAFQIHKVVKQLGHHCDFPSVIITGGFKMSQQMEFLR
QPCDILVATPGRLAKIMEEDAVDLSDIEILIIDEADRMLDMGQGPTVRALIEAIPGDFQA
GLFSATLGGGGIEKFAAEVLENPEVVQIDAPNQKSVQVQQAVYLANDKEHKHALLTSILN
DASCESAIVFCNKKERAIEVTEFLQSQNLSAQVLHGDFIQAVRMEKMQKFKSGKIKILVA
TDVAARGLDMLNITHVINYDMPFRGDMYIHRIGRTGRAQQVGVAINLIERHDLPNLERIE
YHLQQKLPVEKIAGLEPSFTLKDALKKATTKKKPKKTTKKKTAKKAVKKKR
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgaagaattggacttagatcccgccctactttcggctattgaacagcaaaaa
tatcacaaaccaacccctattcaagaagcggctattccaattttaatggagcgccaagac
attcttgcgggtgccgctactggcacagggaaaaccgctgcatttgtactgcctgcactg
cagtttttattagacgaacctgaacgtagtaaccatccacgtgttttgattttagcccct
actcgtgaactcgcatttcaaattcataaagtggttaaacaactcggtcatcactgcgac
ttcccatcagtgattattacgggtggctttaaaatgagccaacaaatggagtttttaaga
cagccttgcgacatcttagttgcaactcctggccgtctggccaaaatcatggaagaagat
gcggttgatttatctgatatcgaaatactaattatcgatgaagccgaccgtatgttggat
atgggacaagggccaactgtacgcgcgcttattgaagcgattcctggtgatttccaagca
ggattattctcagcgacattaggtggaggtggaattgaaaagttcgccgctgaagtgtta
gaaaatcccgaagttgtgcaaattgatgcccccaaccaaaagtcggttcaagttcaacaa
gcggtctatttagcgaatgataaagaacacaaacatgcactattaaccagcatactgaat
gacgctagctgcgaaagcgccattgtattctgtaataaaaaagaacgcgctatcgaagtc
actgagtttttacagtcacaaaatttatctgcacaagtactgcatggtgattttattcaa
gctgtgcgcatggaaaaaatgcaaaagtttaagagtggcaaaattaaaattttagtcgct
accgatgtcgctgcgcgtggcttggatatgttaaatattacacacgttattaactacgac
atgccttttcgtggtgacatgtatattcaccgcattggccgtacaggacgtgcccaacaa
gttggggtggctatcaatttaattgaacgccatgatttaccaaatttagaacgcattgag
tatcatctacaacaaaaattaccagtagaaaaaatcgctggtctagagccaagcttcacg
cttaaagatgcattaaagaaagcgactacgaaaaagaagcctaaaaaaacaactaaaaag
aaaacggccaaaaaggccgttaaaaagaaacgttaa
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