Thermovirga lienii: Tlie_0639
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Entry
Tlie_0639 CDS
T01644
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tli
Thermovirga lienii
Pathway
tli03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tli00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Tlie_0639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tli03021
]
Tlie_0639
03400 DNA repair and recombination proteins [BR:
tli03400
]
Tlie_0639
Enzymes [BR:
tli01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Tlie_0639
Transcription machinery [BR:
tli03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Tlie_0639
DNA repair and recombination proteins [BR:
tli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Tlie_0639
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
SHOCT
7TMR-HDED
Biotin_lipoyl_2
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AER66374
UniProt:
G7V8T3
LinkDB
All DBs
Position
687744..692729
Genome browser
AA seq
1661 aa
AA seq
DB search
MSQHEITGVKIKLASPERIRELSSGEVKKPETINYRTLRPEKDGLFCERIFGPTKSYECA
CGKYKRSGPKFKGVVCDRCGVEITDSRVRRERLGHIELAAPVVHIWYLKGIPSRLSLLLG
TPSKDLEKVVYFAPIRRREQVFKVVIDGKKTNLVKRGDLISASEERIHRHYDHKFKSEEA
YRVVQVEDVPLSEGDIISAHQLGMYKRDYGDKIFQAEPAFRVVRDSADGRFSEGDVLSQT
ELNNLRNDGVSVEVERALAGSEEGFVVTAVSKLPFSKGDVISASENQLFSQKYPGRFTVQ
HETVTLEDPCYIVIDGGNSPFKVGDVILEREYRLCASYDKEFKAGIGAEGVLELLKTLDL
DELSASLREEIAETTGQKKRKLIKRLQVVEDFRKGDSKPEWMILEVLPVIPPDLRPMVQL
DGGRFATSDLNDLYRRVINRNNRLKKLQELRAPDIIIRNEKRMLQESVDALIDNGRMGKA
VLGAGNRPLKSLTDLLRGKKGRFRQNLLGKRVDYSGRSVIVIGPNLKLNQCGLPKDMALE
LFKPFVIQRLVQKGLVPNVKSAKRAIERRREEIWEALEEVIKGHSVLLNRAPTLHRLGIQ
AFEPVLMEGKAIRLHPLVCAAFNADFDGDQMAVHVPLSIEARVEAQMIMLSAKNLLSPAS
GKPVVTPTQDIVLGIYYLTGMREGLKGEGTYYRDIDDVLSALDHGLVHVNAKIKVKHAGE
WVETSPGRVLFNSVIPEELRFINSQMNKKSLGSLIDAAYDKVEHEKLVKMLDDIKTLGYH
WATVSGLSLCLGDVVVPPQKQDIVKKALEEEEELSAQYQMGILTEDEYLRQKETLWSEAS
RQAADSILANMSDTNPLKMMVQSGARGSKSQLAQMAGIRGLMADPSGRIIDYPIVSNFRE
GLNMLEYFISTHGARKGLADTALRTAKSGYLTRRLVDVAQDLIITGEDCGTDKGIAIRAL
VRDEKVVIPLSERIAGRTALVDVINPSTGEVIVRGGEIIDNETAELIEKLGIEEVMVRSP
MTCALQNGICRTCYGTDLSQRRKVSIGEAVGVVAAQSIGEPGTQLTMRTFHTGGVRITGE
DITQGLPRIEQLFEVRKPKKIAYLAEIDGVVSEIREMEGKRKIFITSEKDGVEFKSSFTV
PASQNLLVEEGQKVKKGQALTEGYVDPYQLLEIEGIEAVQNYLVDSIQDVYRSQGVSINN
KHIEVILRKVAPVNRVRIVDEGDSSFVANDLVWVRDLEREIEEIRAENDKFIKEAVEAIE
GKVLKEAKGQGNLESVIAFKDEALDENKIRRILMPGTPVSELYLEDQKGTLRVIVGEASF
RRELEGLELVEPVQLEGDKRIEANSPLTAGQLALLTKGKPAEYMVRDVELLEELEDKAYL
ADDLILDGKVVAFKDRVITPDVVSIIRDQNIEELKLWRNPETVTVADAMQKKLIDELWGK
SLTKAVDEEGNEVADIPHMVDGRVVRGLIANELTAIEVEGHIYTRQSILRQALTDVAYGK
VLLEDVFDGKGELVASAGMDVNHQVLDALVEADPEVLILRPIYAHSETKRVIQRVSFVRR
LRNEPVWKPVIHGVTKAALNTDSFLSAASFQQTAQVLAGAAVRGDHDKLKGLKENVIIGH
LIPAGTGREEYRKIQVFPKKVESEPGKEESEESANLEDIFE
NT seq
4986 nt
NT seq
+upstream
nt +downstream
nt
atgagccaacatgagatcacaggagtgaagataaagctagctagcccggagaggataagg
gagctctcaagcggagaagtcaaaaaacctgagacaataaattacaggactttgaggcct
gagaaggatgggttattctgcgagcgcatcttcgggcccaccaaaagctatgaatgtgct
tgtggtaagtataaacgcagcggccccaagtttaagggggtagtttgtgatcgctgtggt
gttgagataaccgatagtagggtgagacgtgagcgattggggcatattgaacttgccgcc
ccagtggtgcatatatggtaccttaaggggataccaagccggttgagtctcctgttgggc
acgccttcgaaggatctggagaaagttgtttattttgctcccataaggcgaagggaacag
gtcttcaaggtcgtcatagatggtaagaagacgaacctagtaaaacggggtgacctgatc
tctgcaagcgaggagagaatacacaggcactatgaccataagttcaaatcagaggaagcc
tacagggttgtgcaggtagaggatgttcctttgagtgagggagacatcatatctgcccac
cagcttggcatgtataagagggattacggagacaagatcttccaggcggagcctgccttc
agagttgtgcgggatagtgcagatggacgatttagtgagggagacgttctgtctcaaacg
gagttgaataatctcaggaacgatggagtgtccgtggaggtggaaagagctcttgcagga
agcgaagagggctttgtggtaacggccgtttccaagctgcctttctctaaaggggacgtc
atatcggcgagcgagaatcagcttttctcccagaagtatcctggaaggttcacagtgcag
catgaaactgtgactctggaggatccatgctacatagttatagacggtggcaactcccct
tttaaagtgggcgatgtgatccttgagagagaataccgcctttgtgccagttacgataaa
gaattcaaggccgggataggggcagaaggtgtcttggagttgttaaaaaccctggatcta
gatgagctcagcgcatctcttagagaggagattgctgagaccacgggtcagaagaagcgc
aaactgatcaagcgcttgcaggttgtggaggatttccgcaaaggagacagcaagcctgag
tggatgatattggaagtattgcctgtcattccgccggatttgagaccgatggttcagttg
gacggaggtcgttttgccacttcagatctaaacgacctgtatcgtcgagtgatcaacaga
aacaatagattgaagaaacttcaagaacttagggctccggacataattataaggaatgaa
aaaaggatgcttcaggagtcagtggatgcccttatcgataacggcagaatgggtaaagca
gtactgggagctggcaacaggcctctcaagagtctcaccgatcttttgagaggtaagaag
gggcgatttaggcagaacctgttgggtaaaagggttgattattcaggccgttctgtcata
gtgataggtcctaacttgaaactcaaccaatgtggtcttcccaaggacatggccctggag
ttgtttaagccctttgtcatacagcgcctcgtgcaaaaaggcttggttcccaacgtaaaa
agcgcgaaaagagccatagagaggcgaagggaagagatttgggaggccctggaagaggtc
atcaagggtcattcagtgctgttgaaccgagcacctacgctccacaggttgggaatccag
gctttcgaaccggtcttgatggaaggtaaggcgatacgcctgcatcctttggtctgcgct
gccttcaatgccgactttgacggagaccagatggccgtacacgtacctttgtccattgag
gcaagggtggaggcccaaatgataatgctctccgccaagaacttgttgtccccagcgagt
ggtaagcctgtggtcaccccaactcaggacatagtcttgggtatttactatctgacgggc
atgagagaaggcctaaagggtgaggggacatattacagagatatcgatgatgtcctgagt
gcgttagatcatgggttggtgcacgtaaatgcgaagataaaagtgaaacatgccggagag
tgggttgagacatctccgggtagggttctcttcaacagcgttataccagaagaactcagg
ttcataaactcgcagatgaacaaaaagtcattagggtccttgatagatgcagcgtacgac
aaggttgagcatgaaaagcttgtcaaaatgttggacgacatcaagactttgggatatcac
tgggcgaccgtaagtggcttgagtctgtgtcttggcgatgtcgttgttccgcctcagaaa
caggacatagtcaaaaaagcattggaagaggaagaagaacttagcgcccagtaccaaatg
ggtattttgacagaggacgagtacttgaggcagaaggaaaccttgtggtcggaagcaagc
cgtcaagcagcggattccatactggccaacatgagtgacacgaatccccttaagatgatg
gttcagtcaggtgctaggggcagtaagagccagttggctcagatggcaggaataagagga
cttatggctgatccatcgggtcgcataatagactacccgattgtctccaacttcagggaa
ggcctgaacatgttggagtactttatttctacccacggtgcacgaaagggtcttgcggat
acggcgctcagaactgctaaatcaggatacttgaccagaagactcgttgatgtggctcaa
gacctgataataacaggagaggattgcggtactgataaaggtatagcgataagagctctc
gtgagggatgaaaaggtagttataccccttagtgaaaggatagcgggtaggacggcatta
gtggatgtcatcaacccctctactggtgaagtaatagtaaggggtggagagataattgat
aatgaaacggcagagctaatagagaagctgggtatagaagaagtaatggtgaggagtcct
atgacctgtgctcttcaaaatggcatatgcaggacctgctacggtacggacctatcccaa
cgtaggaaggtctccataggtgaggctgtgggtgtcgttgctgctcagtccataggagag
ccaggaacccagcttacgatgcgcaccttccatacgggtggagttaggataacaggtgag
gacataactcagggtctgccgaggatcgaacaactctttgaggtccggaaacccaagaag
atagcctatcttgctgagatagatggagtagtcagcgagataagggagatggaaggcaag
aggaagatctttataacgtcggaaaaggatggagttgagtttaaatcctccttcacggtt
cctgcgtcacagaacttgctggtagaggaagggcagaaagtcaagaagggacaggccttg
acggaaggatatgtagatccatatcagttgttggagattgaaggcattgaagcggtacaa
aactatctagtggatagcatccaagacgtctatcgctctcaaggtgtttccataaacaac
aaacatattgaggtcatattgagaaaggttgctcctgtcaaccgagttaggatagtggat
gagggagatagctcctttgtcgccaacgacctggtttgggtcagagacctggagagggaa
atagaggagattcgggcagagaacgataagtttataaaagaagctgtggaagccattgag
ggcaaggttctaaaggaggctaaaggccaggggaaccttgagagcgttattgccttcaag
gatgaggccctggatgagaataagataaggcgcatattgatgcctggtacccctgtcagc
gagctgtatttggaggaccaaaaaggaaccttgcgggtgatagttggagaggcttctttc
agaagggagcttgaggggctggagttggttgagcccgtacagctggaaggtgataaaaga
atagaagccaattcgcctttgacggcgggacaacttgcgctcctcactaagggcaaacct
gcagaatatatggttagggatgtcgagcttctggaggagctggaagataaagcgtactta
gcggatgacctgatattggatggaaaagtggtggccttcaaggatagagtgataacgcct
gatgtggtgagcataatcagggaccagaatatcgaggagcttaaactgtggagaaatcct
gagacggttaccgtggcagacgcaatgcaaaagaagctgatagatgaactttggggtaaa
tctctgacaaaggcagtcgatgaagagggtaacgaagttgcggatattcctcacatggtt
gatggacgggtcgttagaggtctcattgcaaatgagctcacggctatagaggttgagggt
catatatatacaaggcaatccatattgcgccaggctctgaccgacgtagcttatggcaaa
gtgttgctggaggatgtctttgatggcaaaggggagcttgttgcttctgctggaatggat
gtaaatcatcaggttttggatgctcttgtggaagcggatccagaagtgctaatactaagg
ccaatatatgctcattcggagacaaagagggttatacagagagtctcctttgtacgtcgc
ctgcgaaacgaaccagtttggaagcctgtaattcatggcgtgaccaaggcagccttgaat
actgacagcttcttgagtgccgcatcgttccagcaaactgcgcaggtccttgcgggagca
gcggtgagaggagaccacgataaactcaaaggattgaaggaaaacgttataatagggcac
ttgattccagcaggtacggggagagaggaatacaggaaaatacaagtgttccccaaaaaa
gtagagtctgaacctgggaaagaagaaagtgaagaatcagcgaacttagaggatatattt
gaatag
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integrated database retrieval system
