Thermovirga lienii: Tlie_0723
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Entry
Tlie_0723 CDS
T01644
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
tli
Thermovirga lienii
Pathway
tli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tlie_0723
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tli03019
]
Tlie_0723
03016 Transfer RNA biogenesis [BR:
tli03016
]
Tlie_0723
Enzymes [BR:
tli01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Tlie_0723
Messenger RNA biogenesis [BR:
tli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Tlie_0723
Transfer RNA biogenesis [BR:
tli03016
]
Prokaryotic type
tRNA degradation factors
Tlie_0723
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
S1_RRP5
EXOSC1
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
AER66456
UniProt:
G7V987
LinkDB
All DBs
Position
755965..758202
Genome browser
AA seq
745 aa
AA seq
DB search
MANVFSVEVGGEVMTFETGTLAKQANGSVTVSMGETVLLVTACFSEEAREGIDFFPLLVD
YEERFYSAGKIPGGFIKREGRPSETAILAARLTDRSIRSLFPEHMRNDVHVVATTLSVDQ
ENSPSVLAINGASAALTISDIPWEGPVGAVRIGYIDGQLVVNPTESLMRNSSLDLVVSGH
RDGITMVEAGANEVSEDLLVEALALAQEEIKKIVDLQLEMMEKIGKEKVQIPEPLEFPGI
DRWIKDNLYEEIKTAVMIHEKKPRAKALDEIERKAIEALMEEHPDKEGYIKEYIGKLIKK
AVRELIVFEGKRADGRRTDEIRPISCKVGVLPRTHGSAIFTRGETQALVTTTLGMVGEDD
QLVDGLQHDETSKRFMLHYNFPPYSVGEVRPMRGPGRREIGHGALAERAVRPLLPDEALF
PYAIRVVSDILESNGSSSMASVCGASLSLMDAGVPIKKAVAGVAMGLIKEGDKVVVLTDI
QGLEDHFGDMDFKVAGTKDGVTALQMDNKAGGITKEILTQALEQAKQGRLFILDKMEEAI
REPREELSSLAPRIYTLKVNQEKIRDIIGPGGKTIRSIVAETGVKIDVEDNGTVLIASSN
RESAQKAISIIEELVKEVEAGDVYLGKVTRLMPFGAFVEVLPGKEGLLHVSEVSTHHVAK
VDDILKPGDMVLVVVKEIDDMGRINLSRKRIFDRKEEVQALYEEAFSEEMIREEKIESSS
KKRERPPVRDRKNSPRSNEQPRRRG
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatgtattttccgtcgaggtcggcggagaggtaatgacttttgagacgggaact
ttagcgaaacaggctaatggttccgtaacagtctccatgggggagaccgtgctgcttgtc
acagcatgtttttctgaggaagcgagagaaggtatagactttttccctcttcttgtggat
tacgaggagaggttttattctgcgggtaagatacccggcgggttcataaaaagggaaggt
aggccgtctgagacggcgatattggctgcacgactgactgatagatccataagatctctt
tttcccgagcatatgcggaacgatgtccacgtggtcgctacaaccctttctgtggaccag
gaaaactccccaagtgttttggcgataaacggcgcgtctgcggccctcaccatatcagat
attccttgggaaggccctgtcggtgctgtgaggatcggctatatagatggacaactggtg
gtaaaccctactgaaagcttaatgcgaaacagttctttagatcttgttgtgagcggtcat
agggatggcataaccatggttgaggctggagctaacgaagtttcagaggatcttttggtt
gaggccttggcgttggctcaggaggaaatcaagaagatcgtagacctccagttggagatg
atggaaaaaataggcaaggaaaaggtccaaatacctgagccccttgagtttcctggtata
gatagatggataaaagacaacctttacgaagagataaagactgccgttatgatccatgag
aaaaaaccgagggccaaggctttggatgaaatagagaggaaagccattgaagccttgatg
gaagagcaccctgacaaagaaggctacataaaggaatacataggtaagttaataaagaaa
gcggtgagggagcttatagtcttcgaaggcaaaagagccgacggaagaaggaccgatgag
ataaggcccataagctgcaaagtgggggttttgcccagaacccatggttcggcaatattc
acaagaggtgaaacccaggcccttgtgaccaccactctgggaatggtaggagaagatgac
cagctggtggatgggctccaacatgacgagacctctaagcgcttcatgctgcattataac
ttcccgccgtactccgtaggtgaggttagacctatgagagggccaggcagacgagagata
ggacacggggcacttgcggagagggcagtcagaccgctgcttcccgatgaagctttattc
ccttacgccattagggtcgtttcggatatattagagtccaacggttcaagttccatggct
tctgtgtgtggtgccagtttgtctttaatggatgctggagtgccgattaaaaaggccgta
gcgggtgttgccatggggctcatcaaggaaggggacaaggtggtggttctaactgatata
caaggactagaagatcactttggcgatatggatttcaaggttgcagggacaaaggatgga
gttaccgccttgcaaatggataataaggcaggtggtatcaccaaggagatacttactcag
gctcttgaacaggcgaaacaaggtaggctgttcatcttggacaagatggaagaagcaata
agggagcctagagaagaactttcctctcttgctcctaggatatacacattgaaggtaaat
caagagaagataagggatatcatcggcccagggggcaaaaccattaggagcatagttgct
gagactggtgtcaagatagatgtggaagataatggtaccgtgctcattgcgtcaagcaac
agggaatccgcgcaaaaggccataagcatcatagaagaattggttaaagaggtggaagca
ggagatgtctacctaggcaaggtgacaaggcttatgcccttcggtgcttttgtggaggtc
cttccaggaaaggagggcttactgcatgtgagcgaagtgagtactcatcatgttgctaag
gtggacgatattctgaagccgggagatatggtcttggtcgtggttaaggagatagacgac
atgggtcggataaacctctccaggaagaggatattcgatagaaaggaagaggtacaagct
ttatacgaagaagctttttcagaagagatgataagagaggaaaaaatagaaagctcctca
aaaaagagggagagacctcccgttagggataggaagaattcgccaagatccaacgagcaa
cctaggaggcgtggctag
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