Thermovirga lienii: Tlie_1489
Help
Entry
Tlie_1489 CDS
T01644
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tli
Thermovirga lienii
Pathway
tli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tlie_1489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tli03019
]
Tlie_1489
03009 Ribosome biogenesis [BR:
tli03009
]
Tlie_1489
Enzymes [BR:
tli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Tlie_1489
Messenger RNA biogenesis [BR:
tli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Tlie_1489
Ribosome biogenesis [BR:
tli03009
]
Prokaryotic type
rRNA helicases
Tlie_1489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
SecA_DEAD
Cas3-like_C_2
DbpA
Motif
Other DBs
NCBI-ProteinID:
AER67213
UniProt:
G7V797
LinkDB
All DBs
Position
complement(1556312..1558030)
Genome browser
AA seq
572 aa
AA seq
DB search
MINAKTQYFDVLREELRAAMKEKGFVAFTPVQEQVMAMDDHDRDMIVRSKTGSGKTLAFL
LPLLNEGTWSNGTPKVLILSPTRELAQQTAKEARWVGRRLDLALAVLVGGMDMATQIRDL
KCGASMVIGTPGRVLDHLRRGKLDLSGLETIVLDEGDQMLDMGFREELESIMDSAPQVER
IWLFSATMPEEIKALARKYLKDPQILSVGEEGRHSDISHKVYRVPRDKRIEGLINTLLWE
NPSKALVFCRTKAETADIAARLSKEGFNTRCLHGDMSQRDRNLTLKLFREGLVNLLVATN
VAARGLDIPYIEKVFQLGLPDDLETFTHRSGRTGRAGEKGENVVILNLKEAERFKVMLQR
TKVKAEWLDVPDKSEILVMSRYRKQLDLMEEGHSPTEDFLEWAEELLKETDPTLLVAKLL
MEVAKDTPCGYELRNELNTERNNLKKVRKGASFDGKSSNAHWNKSKATAKMVKIGLNPSV
DWNVGKILGCLCNALGVRSSEVAGIKIRGQSVHVELSPLAIKNLRKRELDLARWGFSKIN
PVEDSHTAKAPKKRGSGRTVKSSRTGSKKKTF
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgattaatgcgaaaacgcaatattttgatgtgctgagagaagaattaagggcagctatg
aaagagaaagggtttgttgccttcacccctgtccaagagcaggtaatggctatggatgac
catgaccgtgacatgatcgtaaggtctaaaacaggttctggcaaaaccttggcttttttg
cttccccttttgaacgaagggacttggagcaatggtacccctaaagttttgattttgtct
ccgacgagggagcttgcacagcagacggcaaaggaagcccggtgggttgggagaagattg
gaccttgctttggctgtgctcgttggcggaatggacatggctacccagatcagggacttg
aagtgcggagcatccatggtgataggcactccaggacgagtcttggatcatcttagaaga
ggtaagttggacctctccggactagaaaccattgttttggacgaaggggaccagatgctg
gatatgggtttccgagaagaacttgagtctatcatggacagtgccccgcaggtagagcgt
atttggcttttttcagccactatgcctgaggagataaaggcccttgcaaggaaatacttg
aaagatcctcaaatcttgtctgttggagaagaggggcgccattctgatataagccacaag
gtttatagggtgcctagggacaagagaatagagggccttataaacacccttttgtgggag
aatccgtcgaaggccttggttttttgccgcactaaggctgagaccgctgatatcgctgca
agattgtcaaaagagggatttaatactcggtgtttgcacggagacatgtctcaaagggac
agaaacctcacgttgaagctttttagagagggcttggtcaaccttttggtagccaccaat
gtggcagccaggggactggatattccttacattgagaaagtgttccagctggggttgcca
gatgacctggaaacctttacccacagaagtggtagaactggcagggctggcgaaaaggga
gaaaacgtcgtaattttgaatttgaaagaggcagagagattcaaggtcatgctacaaaga
accaaggtaaaagccgagtggcttgatgtgcctgataaaagcgagattttggtgatgtct
cgctacaggaagcagcttgacttgatggaggagggccattcacctacggaagattttctg
gaatgggcagaagagcttttgaaggaaacggaccctacacttttggtggctaaactgctt
atggaggtagccaaggacaccccctgtggatatgagcttcggaacgaacttaacacagag
agaaataaccttaaaaaggttcgcaaaggtgccagtttcgatggaaaatctagtaatgcc
cattggaataaatctaaggcgaccgcgaagatggtaaagattgggcttaacccatcggtt
gactggaacgtggggaaaattttgggatgcctttgtaatgccctgggagtaagaagctcc
gaggtcgcaggaattaaaattaggggccaaagtgtgcatgtagagctttcccctttagct
ataaaaaatttgaggaaacgggagttggatttagcccgttggggattttccaaaataaac
ccagtagaagatagtcatactgctaaagctcccaagaaaagaggttctgggaggacagtt
aaaagctcgaggacaggatccaagaaaaagaccttttag
DBGET
integrated database retrieval system
