Temnothorax longispinosus: 139809075
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Entry
139809075 CDS
T10889
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tln Temnothorax longispinosus
Pathway
tln03013
Nucleocytoplasmic transport
tln03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tln00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139809075 (Upf1)
03015 mRNA surveillance pathway
139809075 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tln03019
]
139809075 (Upf1)
Enzymes [BR:
tln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
139809075 (Upf1)
5.6.2.5 RNA 5'-3' helicase
139809075 (Upf1)
Messenger RNA biogenesis [BR:
tln03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
139809075 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
139809075 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
SLFN-g3_helicase
UvrD-helicase
NAT10_TcmA_helicase
DEAD
NPHP3_N
ATPase
nSTAND3
AAA_22
SRP54
AAA_16
nSTAND_NTPase5
AAA_10
AAA
AAA_7
AAA_32
AAA_5
Motif
Other DBs
NCBI-GeneID:
139809075
NCBI-ProteinID:
XP_071627802
LinkDB
All DBs
Position
2:complement(10277062..10284218)
Genome browser
AA seq
1119 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEETDLIGADTQGSEFDFTDFTLPSQTQASQHDATQTQSNQPV
QVVNGTNGSSSLDLKISGAAQSLAELQFEEEEEEAYYNRDLPEYACKYCGIHEASCVVMC
NVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCATRNVFVLGFI
PAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIEDRSFLSWLVKFPSEQEQLRARQI
SAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADYD
KRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSGI
GHVIKIPDNYGEEVGIELKNNSGAPTECISNFVVDFIWKSTSFDRMQSALRKFAVDDTSV
SAYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGPPGTG
KTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSSLKVVRLCAKSREAIDSPVS
FLALHNQIKNMETNTELQKLQQLKDETGELSSVDEKRYRLLKKAAEKELLEAADVICCTC
VGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAR
AGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKIDF
PWPAPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLRCGVKPEQIGVITPYE
GQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPR
RLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKPK
KLVNAANPGSHFMSTSMYDAREALIPGSVYDRSGAQVNGTQNHNPYYQRNVSVDIFNRTH
DTISYISPERAQAAMNNMPVPVGMFMNMTHVPPRFYNQHQQALQARQNQKNRRGATASAR
NRSGPRMGKLSQTEQNTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAVG
EFQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSQPY
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgacgcgtacgggcccagcagccagaccctcacgttcctcgacaccgaggag
accgacctgatcggcgcggacacgcagggcagcgagttcgacttcaccgacttcactcta
ccgagccagacccaggcctcgcagcacgacgcgacccagacgcagtccaatcaacccgtt
caggtggttaatggtacgaatggcagctcgtcattggatctgaagatttccggagcagct
cagagtctcgccgagttgcaatttgaagaggaggaggaggaagcgtactataaccgcgat
ttgcctgaatatgcgtgtaaatactgcggtatccatgaagcgtcctgcgtggttatgtgc
aacgtctgccgaaagtggttctgcaatggacgcggcaatacgtctggatcccatattatc
aatcatcttgtccgtgctaaacacaaggaggtcactttacacagagatggccctcttgga
gaaaccgttttggaatgttattcctgtgccacgagaaatgttttcgtattgggttttatt
cctgctaaagctgattccgtagtcgtgctactctgccgccaaccgtgcgcggcacagagt
tctttgaaggatatgaactgggatcaagagcaatggaagcctttgatcgaagatcgcagc
tttttgtcctggttggtgaaatttccgtccgaacaagaacagttaagagctaggcagatc
tctgcgcaacagattaataaattggaggaattatggcgagacaatgttgacgctactttc
caagatttagaaaagcctggagtagacgaggaaccgcagcaggttctgttacgttacgag
gacggatatcagtatcaaaatatttttggtccacttgtgaaattggaagccgattatgat
aaacgcttgaaagaatctcaaactcaagagaacattgaagtacgatgggacgttggattg
aacaaaaagactatcgcatactttatgctggccaaaacggacggagatatgaaattgatg
catggggatgaattgaggctccgttatctgggagaactacataagccttggtctggaatt
ggacacgtgattaagattcccgacaattacggggaggaagttggaattgagctgaaaaac
aattctggagcgccgacggaatgcattagcaactttgtcgttgactttatttggaaaagc
acgagttttgatcggatgcaatccgcgttacgcaaatttgctgtggatgatacatccgtg
tcagcttacatatatcacagactattgggacacgaagtagaagaggttctattccgttgt
catcttcctaaacattttagcgcaccgaatctacctgatttgaacagatcgcaggtgtac
gctgtgaaacacgcaatacaacggcccttatccctgatccaaggaccaccaggaacaggt
aaaactgtgacgagcgctactatagtttatcaattggtgaaacagaacggtggtcctgtt
ctcgtatgcgctccttcgaacaccgctgtcgatcaattgaccgaaaagatacataaatca
agtttgaaagtcgtacgattgtgtgccaaatcgcgagaggccatcgattcgccagtgagt
ttcctcgctctacataatcaaataaagaacatggagacgaacaccgagttgcaaaagttg
caacaactgaaggatgagacaggcgaattgtcgagcgtcgacgagaagcgctatagactc
ttgaagaaagcggcggaaaaggaacttctggaagcggccgatgtaatttgttgcacctgc
gtaggcgctggtgatccaagattgcacagattaaagttccattctatacttatcgatgag
agcatgcaggctaccgaaccggagtgcatggtaccagttgttctaggagcgaaacaattg
atcctcgtcggagatcactgccaattagggccggtggtgatgtgcaagaaagctgccaga
gctggtttatctcaatctttgttcgaaaggctggtggtgttgggaattagaccgttccgc
ttagaagtacaatatcgtatgcatcctgatctgtcacgatttccatctaacttcttttac
gaagggtctctgcagaatggcgtttgcgccgacgagagaaaattattgaaaatcgacttt
ccctggcctgcaccggacaagccaatgttcttttacgtcacgcaaggtcaagaagagata
gctggaagtgggacatcttacttgaatcgtaccgaagcgtctaacgtcgaaaagataacg
acacgattcttacgttgcggcgtgaaaccggaacagattggagtgataaccccgtacgaa
ggtcaacgggcctatcttgtgcagtatatgcagtaccaaggttccctgcactcgaaattg
tatcaagagatcgaagtggcgagtgtggacgcttttcagggacgagagaaggatataata
ataatgtcctgcgtacgatccaacgagcatcagggcattggatttttgaatgatcccaga
agattgaacgtggcgttgactcgcgcaaaatacggcatcattatcgtaggaaatcccaag
gtgctttcgaagcagccgctctggaaccacctgctcagcttttacaaggagcagaaggtg
ctggtcgaagggccgttgaacaatctgaaggagtccatgattcaattcgctaagccaaag
aaacttgtgaacgcggctaatccaggctcgcacttcatgtccacgtcaatgtacgacgcg
cgcgaagccctgatccccggatcggtgtacgatcgttcgggcgcacaggtgaacggcacg
cagaaccacaatccgtactaccaaagaaacgtgtcggtagacattttcaaccgtacgcat
gacactataagttacatcagtccggagcgggcgcaggcggcgatgaacaacatgcccgtg
ccggttggcatgttcatgaatatgacgcacgtgccgccgcgtttctacaatcagcatcag
caagcgttgcaggcacgccagaatcagaaaaatcgacgcggcgccaccgcctcggcgagg
aaccggtcaggcccgcgtatgggtaaactgagtcaaaccgagcaaaacacgcagccgtac
agtcaaccaggtctgccgttgacgcagggcacgactcagggcatgtctcaacccggtttc
agtctttcgcagcctggcctcagtcaagcggaactctcacaggactcgttcgcggtcggc
gaatttcaatcgcagatggacggcctgctgtcgcaggactcgacctaccagggcgaccga
agtggcttctaccagtcgggccagtcgcaagccggaggacagttctcgcagccctactga
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integrated database retrieval system
