Temnothorax longispinosus: 139809197
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Entry
139809197 CDS
T10889
Symbol
Patr-1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
tln Temnothorax longispinosus
Pathway
tln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139809197 (Patr-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tln03019
]
139809197 (Patr-1)
Messenger RNA biogenesis [BR:
tln03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139809197 (Patr-1)
mRNA degradation factors
5'-3' decay
Decapping complex
139809197 (Patr-1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ctf8
PLATZ
Motif
Other DBs
NCBI-GeneID:
139809197
NCBI-ProteinID:
XP_071628019
LinkDB
All DBs
Position
2:complement(1572461..1580472)
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AA seq
720 aa
AA seq
DB search
MADTFFGFDTTLGDNNLEDGLDGPLEEDELEEEEYDALNDETFGPDAAIGDWEEDHEKLA
EITESNRLHNQSATNKKTISNINIEDNLSHLVLDKEGIVPRPGVWGSPLNLSPPKPRLSL
PNVCTVEELERGLIANRPPPGLSKPQTQQQKKSEGSLLFEALSLKEKLQVNGLPPPRFPP
GLGLPGAHPIVLPNIRAPHPQLMQHPRLLGLINQPGNMLRYPPPHLMLPQPVPRQALHGS
YGFPPQLHPNLGGPQFLRPDHMMPAFPNNQTNHQQHQPYSHLGNQRNQNRSYYHSEQQTV
HQPFFKNNQYPHRNHDRNNQRPYHHQHYSHSVNGNASGEYEHSGKLAIKPHEKQWLINIQ
LLQLNTIQPYVDDHYYVVFCDKRNKQHANQEQKDKKHHNNNGYHRDHRDWEPSPQAPSRS
AYTPAQFENSLGKLHCSSVTAPRKLIDMDVVSNSDSQSTSQSQQKDTKKTRQLLLEIERL
YTLQFKLEDLSNPLASIPEPQQQQEGESEVNTTKTEPELISMILICMQHVIQDDKLASML
SIRKGKTLLLRFLPHLNVTEHSKQLRELWTAIFKGLAVIGRRDCHILTDFYSEFRRWLDA
VKDFDTILRLARALSDSAIVHPVKNNSLTFALLNKFGVSAIAAMFEHAEQLCVTDDSLPS
EWSTFVVTIVELIGDSPPCVAPCQPITANTLNKHLNRISSLKLERYTALACLLTDANPLR
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggcagacacttttttcggtttcgataccacgctcggagataacaatctcgaagatgga
ctggatggtccattggaggaagatgagcttgaggaggaagagtacgatgcgctgaatgat
gagacgtttggtcccgatgctgctatcggtgattgggaagaagatcatgagaaacttgcc
gaaattactgaatcaaatcgccttcataatcagagtgcaacaaataagaagactatttct
aacataaatatcgaggataatttatcacatttggtattggataaggaaggaatagttccc
cgacctggtgtgtggggtagtcctttaaatttatctcctccgaaaccacggttatcttta
ccaaatgtctgtacagtggaagagttggaaagagggcttattgcaaataggccgccacca
ggtctcagtaaaccacaaacgcaacaacagaagaagtctgagggttcacttctctttgag
gccctctccttgaaagagaaacttcaagtcaatggcctacctccaccacgttttccgcca
ggattgggtctacctggagcacatcctatagttttgcccaatataagagcaccacatcct
cagttgatgcaacaccctagattattaggcttaattaatcaacctggtaatatgttacgt
tatcctcctccgcatttaatgttgccacaaccagttccaaggcaagctcttcatggctct
tatggttttcctcctcaactgcaccctaatctaggaggcccgcagttccttcggccagat
cacatgatgcctgcatttcctaataatcaaaccaatcaccaacaacaccaaccttattca
catttaggaaatcagagaaatcagaacagatcttactatcatagcgaacaacaaactgta
catcaaccattttttaaaaataatcaatatcctcaccgcaatcatgacagaaataatcaa
agaccttatcatcatcaacattactcgcacagtgttaatggtaatgcttcgggagaatac
gaacactcaggaaaacttgctataaaacctcatgagaagcaatggttaattaatattcaa
ttattacaacttaatacaatccaaccgtacgttgatgaccattattatgtcgtattctgt
gataaacggaataagcaacatgcaaatcaagaacaaaaagataagaaacaccataataac
aatggatatcatagggatcatagagattgggaaccatcacctcaagccccttcaagatca
gcatacacgccagctcaatttgagaattcattaggcaaacttcattgcagcagtgtgaca
gcaccacgtaaacttatcgatatggatgtcgtatcaaatagcgattctcagtctacttct
cagtcccaacagaaagacactaaaaaaacacggcaattactccttgaaattgagagactg
tatacattgcaattcaaactcgaagatctgagtaatcctctcgcttcaattccggaaccg
caacaacaacaggaaggggaatctgaagtaaatacgactaaaactgaaccggagttaata
agcatgattttaatatgtatgcaacacgtaatacaagatgataaattagctagtatgcta
agtattcgaaaaggaaagacattactactgcgttttttacctcacctgaacgtgacggaa
catagcaagcagttgagagaattgtggactgcgatatttaaaggattagccgtaataggc
cgtagagattgtcatatattgacagacttttattccgaatttcgaagatggcttgatgca
gtgaaagattttgatactatattgcgattagcgagagcattatccgactctgctattgtt
catcctgttaaaaataatagcttaacttttgcccttctgaataagtttggtgtgtctgca
atagcagcgatgttcgagcatgctgaacaattgtgcgtcacagatgattccctgccttct
gaatggtcaacttttgtagtgacaatagttgagctaattggtgactcgcccccctgtgtt
gcaccttgtcaaccaattactgcaaacacgctcaataaacatctgaatcggatttccagt
ttaaaactagaaaggtatacagcgctagcgtgcttgttgactgatgccaatccgttacga
tag
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