Temnothorax longispinosus: 139809276
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Entry
139809276 CDS
T10889
Symbol
Mtr4
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tln Temnothorax longispinosus
Pathway
tln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139809276 (Mtr4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tln03019
]
139809276 (Mtr4)
03041 Spliceosome [BR:
tln03041
]
139809276 (Mtr4)
03009 Ribosome biogenesis [BR:
tln03009
]
139809276 (Mtr4)
03016 Transfer RNA biogenesis [BR:
tln03016
]
139809276 (Mtr4)
Enzymes [BR:
tln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139809276 (Mtr4)
Messenger RNA biogenesis [BR:
tln03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
139809276 (Mtr4)
Spliceosome [BR:
tln03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
139809276 (Mtr4)
Complex C
U4/U6.U5 tri-SnRNP related factors
139809276 (Mtr4)
Ribosome biogenesis [BR:
tln03009
]
Eukaryotic type
Pre-60S particles
Helicases
139809276 (Mtr4)
Transfer RNA biogenesis [BR:
tln03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
139809276 (Mtr4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Death_3
nSTAND3
Motif
Other DBs
NCBI-GeneID:
139809276
NCBI-ProteinID:
XP_071628147
LinkDB
All DBs
Position
3:8708312..8713147
Genome browser
AA seq
1012 aa
AA seq
DB search
MANFTEDLFDVFDEHDTEGDDTEIPHIVKKIEPETGVKRQLDTDDDKSAVKKLRHESVLD
DINLEEVACRIKVHTVETVESCMHEIAIPPNQEYVPLEHQQDKPAKEYKFILDPFQKEAI
LCIDNNQSVLVSAHTSAGKTVVAEYAIACSLRDKQRVIYTTPIKALSNQKYREFHEEFKD
VGLVTGDVTINPTASILIMTTEILRNMLYRGSEVMREVGWVIFDEIHYMRDKERGVVWEE
TLILLPDNVHYVFLSATIPNARQFAEWVTHLHNQPCHVVSTDYRPTPLQHYIFPVGGDGI
HLVVDETGQFKEENFNRAMACLQNMGDAAKGDMKGRKGGLRATNSGQTNIFKMVKMIMER
NFAPVIIFSFSKKDCEVYAMQMAKLDLNTLEEKKLVDEVFNNAVDVLNDDDKKLPQVTNL
LPLLRRGIGIHHGGLLPILKETVEILFGEGLIKTLFATETFAMGLNMPARTVLFTAPRKF
DGKDFRWITSGEYIQMSGRAGRRGLDDKGIVILMIDEQVSPVVGKAIVQGKPDPINSAFH
LTYNMVLNLLRVEEINPEYMLERSFFQFQNQAGIPALYNKVKELSTAYNTVNVDRYDEIA
SYHDVRQQLNRLSKEFQSFLTRPEYLVPFLMSGRLVKVKNENETFDWGMVVNFKKKNPKN
PVKDKTVIVIDVLLHLSKDSKEGNPIPCRDGEEGEMEVVPVLHNLISQISSIRVHYQKDL
RPPDNRKSVLKSIREVKKRYSGDLPLLNPITDMHIQDQAFKDIVKKIEVLEKRLYAHSLH
KDPNVNVLYEQFLHKEELATQLKQAKEEFKQAKSILQMDELKCRKRVLRRMAYCTSADVI
ELKGRVACELNGADELLMTEMIFNGLFNSLSVPQMVALISCFVCDEKSNEMPKSTEELSG
PLRQMQDLARRIAKVSTEANLELDEDAYVDRFKPYLMDVIYAWCKGATFLQICKMTDIFE
GSIIRCMRRLEEVLRQLCQAAKGIGNTDLENKFSEAIKLIKRDIVFAASLYL
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atggcgaattttaccgaagacttgtttgacgtttttgatgagcacgatacagagggtgac
gatacagagatcccgcatattgtaaagaaaatcgagccagaaacaggagtaaagcgacaa
cttgatacagacgacgataagtcagctgtcaaaaaattgcgacacgaatctgtcttggat
gacatcaacctagaggaggtggcatgtcgtataaaagtgcatactgtagaaactgtagaa
tcttgtatgcacgagattgctatccctcctaatcaggagtatgtacctttggagcatcag
caagacaagccagccaaagaatataaatttatacttgatccatttcaaaaggaggcaatt
ttatgcattgataacaatcagtcggttcttgtctccgcacatacgtcagctggtaaaact
gtcgtggctgaatatgcgatagcgtgttctctcagggataagcagagagtaatatacact
actccgatcaaagcgttgagcaatcagaaatatagagaatttcacgaggaatttaaggat
gttggtttggtaacgggcgatgttactataaatccgacagcgagtatactaatcatgact
actgaaattttacgaaatatgctctacagaggttcagaggtaatgcgtgaagttggttgg
gtaattttcgatgagattcattacatgcgcgataaagagagaggcgtggtgtgggaggaa
acgcttatcctattgccggacaatgtacactatgtatttctatccgctactataccaaac
gcacgacaattcgcggagtgggtgacgcatttgcacaatcaaccctgccatgtagtgtct
acggactacagacctactccgttgcaacattatatctttccagttggcggtgatggtata
catctggttgtagacgagaccggccaattcaaggaggaaaatttcaatagagccatggcg
tgcctacaaaatatgggtgacgcggctaaaggtgacatgaaaggacgcaaaggtggtcta
cgtgccacgaacagcgggcaaacgaatatcttcaagatggtaaaaatgatcatggagaga
aacttcgcgcccgtaataatcttcagtttttcgaagaaggattgcgaggtttacgcgatg
caaatggccaaactggatttgaacacgttagaggagaaaaaactggtagatgaggttttc
aacaatgcggtagacgttctcaatgacgacgacaaaaagttaccgcaagttacgaacttg
ctgccgcttttgcggcgcggaataggaatccatcacggtggactcttgccgatcttgaag
gagacggtcgagatattattcggcgagggtctgatcaaaacgcttttcgccactgaaacg
ttcgcgatgggtctgaacatgccagcacggacagtcctgtttacggcaccccgtaaattc
gatggcaaggactttcgttggatcacgtcgggtgaatacatccagatgtccggtcgcgcc
ggcagaagaggtctcgacgacaaaggaattgtcatattgatgatagacgagcaagttagt
cccgtcgttggtaaagctatcgttcaaggaaaaccagatccaatcaactccgcgtttcac
ttgacctataatatggttcttaatcttctccgagtggaagagattaatccagaatacatg
ttggaaagaagcttctttcagtttcaaaatcaagctggtattccagctttgtataacaag
gtaaaagaattatctaccgcttacaataccgtaaatgtggacagatatgacgagattgct
tcttatcacgatgtacgccaacaactcaatcggctcagcaaagagtttcaatcatttcta
acacgaccggagtacttggttccgtttttaatgtctggaagattagtaaaagtgaaaaat
gaaaacgaaacgttcgattggggcatggtagtgaattttaagaagaaaaatccgaaaaat
ccagtaaaggacaagactgttattgtcattgacgttttacttcacttatcgaaagattct
aaagaaggcaatccaattccatgtcgcgatggtgaagaaggcgaaatggaagtagttcct
gttttgcataatttaatttcgcaaatcagttcaatcagagtacattatcaaaaggatctt
aggccgcctgataataggaagagcgtactgaaatcgatacgagaagtgaaaaagagatac
tcgggagatttaccgttactcaaccctattacagacatgcatatacaggatcaggctttt
aaagatattgtcaaaaaaattgaagtgttagagaaaagattatatgcacattctttgcat
aaagatcccaatgtaaacgtattatacgaacaatttttgcacaaggaagaattggctacg
caacttaagcaagccaaggaagagtttaagcaggctaagtcgatacttcaaatggacgaa
ctgaaatgtagaaagcgagttttaaggagaatggcgtattgcacatcggcggacgttata
gaattgaaaggacgtgtagcttgcgagctgaacggtgccgatgagcttttaatgactgag
atgatttttaatggtctttttaattctttgagcgtgccacaaatggtagcgttaatcagt
tgttttgtatgtgacgaaaagtcaaacgaaatgcctaaaagtacagaggaattaagtggt
ccgcttagacagatgcaggacttggctcgacgaatagcaaaggtatcgacagaggccaat
ctggaattagacgaggatgcatatgtcgatagattcaaaccgtatttaatggacgttata
tacgcttggtgtaaaggcgcaacattcttacaaatttgcaaaatgacagatatatttgaa
ggatctattatcaggtgtatgcgacgtttagaggaggtacttcgacaattatgtcaagct
gcaaaaggtatcggaaatacagatctagaaaataaatttagcgaggcgatcaaacttata
aaacgggatatcgtatttgctgcgtccttatatttataa
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