Temnothorax longispinosus: 139809296
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Entry
139809296 CDS
T10889
Symbol
Cpsf2
Name
(RefSeq) probable cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
tln Temnothorax longispinosus
Pathway
tln03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tln00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139809296 (Cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tln03019
]
139809296 (Cpsf2)
Messenger RNA biogenesis [BR:
tln03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
139809296 (Cpsf2)
U7-dependent histone pre-mRNA processing factors
139809296 (Cpsf2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B_2
Lactamase_B
Motif
Other DBs
NCBI-GeneID:
139809296
NCBI-ProteinID:
XP_071628175
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Position
3:12052965..12056659
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AA seq
737 aa
AA seq
DB search
MTSIIKLHAVSGAMDESPPCYILQVDELRILLDCGWDENFDQDFIKELKRHVHQIDAVLL
SYPDPLHLGALPYLVGKCGLNCPIYATIPVYKMGQMFMYDIYQSRHNMEDFDLFTLDDVD
AAFDKIVQLKYNQSISMKGKGYGVTLTPLPAGHMIGGTIWKIVKVGEEDIIYAVDFNHKK
ERHLNGCELERLQRPSLLITDAFNATYQQARRRTRDEKLMTNILQTLRGGGNVLVSVDTA
GRVLELAHMLDQLWRNKESGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMRSFEGARN
NPFQFKHLQLCHSMAELNQVASPKVVLASTPDMECGFSRELFLQWCSNPQNSIILTSRTS
PGTLARDLVEKGGNRNITLEVRRRVKLEGIELEEYQKREKLKQEQMKQEQMETADVSSES
EDEIEVGTGRGKHDLLVKQETKPGFFKQSKKQHPMFPFVEEKIKIDEYGEIIKPEDYKIA
ETVPEVEDNKENVEMKQEEANYHPEVAMDIPTKCVQVSRTMTVNAAVTYIDFEGRSDGES
LQKILAQLRPRRVVLVRGSPKDTDILAQQAQSTGARVFIPGRGETLDATTETHIYQVRLT
DALVSGLNFSKGKGDSEVAWIDAMITARDQVCRDAIADTESENAIDESDKILTLEPLPLN
EVPGHQTTFINELKLSDFKQVLNKSNIPSEFSGGVLWCCNNTIAVRRHEAGKVILEGCIS
EDYYKVRELLYEQYAIV
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgacatccattataaagcttcacgctgtctccggagcgatggatgaatccccaccttgc
tacatattgcaagtggacgaactgaggatattattagattgtggatgggacgaaaatttt
gaccaggacttcataaaagaattaaagagacatgtgcatcaaatagatgcggtattgctt
tcatatccagatccattgcatttaggtgcattaccgtatctggtaggtaaatgtggcttg
aattgtcccatatacgctaccatacccgtctacaaaatgggccaaatgtttatgtacgat
atatatcagtcccgacataacatggaagactttgatctatttactctagacgacgttgat
gccgcatttgataaaattgttcagctaaaatacaaccaaagtatatcgatgaaaggtaaa
ggctatggcgttacattgacacccttgccggcaggacacatgattggtgggacaatttgg
aagatcgtgaaagttggagaagaggatataatatatgccgtagattttaatcacaaaaag
gagcgccacttgaacggttgtgaattggaaagattgcaaaggccgtcactattgataaca
gatgcattcaatgccacgtatcaacaagccagacgaagaacaagggatgagaagttgatg
actaatatcttgcaaacattgcgaggcggtggaaatgtgttggtcagtgtagacacggct
ggtcgtgtactggagctggcacatatgttggatcagctgtggcgtaataaggaatccgga
ttacttgcctattcattagctcttcttaataacgtgagctacaacgttgtagaattcgca
aaatcgcaaatcgaatggatgagcgataaattaatgagaagctttgaaggcgcacgcaac
aatccatttcaatttaaacatttgcaactttgtcacagtatggctgaattgaatcaagtc
gcaagtccaaaggtggttcttgcaagcactcccgatatggaatgcggattttcccgagaa
ttatttcttcaatggtgttctaatccacaaaacagtattatattaacgagtaggacgtct
cctggtacacttgccagagacttggtagagaaaggaggtaatcgaaacattacgttagaa
gtgagaagacgagtgaaactcgaaggtattgaactggaagaatatcagaaaagagaaaag
ctgaagcaggagcagatgaaacaggagcagatggaaactgcagacgtgagttccgagtcg
gaagacgaaatagaagttggtactggcagaggaaagcacgatttactggtgaagcaagaa
actaagcctggcttttttaaacaaagtaaaaagcaacaccctatgtttccatttgtggag
gaaaagattaaaatagacgaatacggagaaatcataaaaccggaagattataaaatagca
gagactgtgcccgaagtggaagataataaggaaaacgtagaaatgaagcaggaggaagct
aattatcatccagaagtagctatggatattccgacgaaatgtgtacaagtttcgcgcacg
atgactgttaacgcggcggtaacatatatagatttcgaaggtagatccgacggcgaatcc
ctacagaaaattttggcgcagctaaggccgagaagagtcgtcttggtcagaggttcgcct
aaagatacagatatactagcgcagcaagcgcaaagtaccggtgcgagagtatttattccg
ggcagaggagagacgctagacgctacgacggaaacgcatatttatcaagtacgtttgacc
gacgctctagtgagcggattgaatttctcgaagggtaagggcgactccgaagtggcctgg
atagatgcgatgataacggcgcgtgaccaggtttgtcgagacgccattgccgatactgaa
tccgagaacgcgattgatgaaagtgacaaaatactgactttggaaccactgccattaaat
gaggttcccggtcatcaaacgacgttcataaacgaattgaaactatccgactttaaacag
gttttgaacaaaagtaacattccatcggaatttagtggaggagtactatggtgctgcaat
aacactatagccgttagaaggcacgaagctgggaaggtaatattggaaggctgcatttcc
gaggattactacaaagtgcgggagctattatacgagcaatatgcaattgtatag
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