Temnothorax longispinosus: 139809946
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Entry
139809946 CDS
T10889
Symbol
Rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tln Temnothorax longispinosus
Brite
KEGG Orthology (KO) [BR:
tln00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tln03016
]
139809946 (Rtcb)
Enzymes [BR:
tln01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
139809946 (Rtcb)
Transfer RNA biogenesis [BR:
tln03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
139809946 (Rtcb)
Prokaryotic type
tRNA splicing ligases
139809946 (Rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
139809946
NCBI-ProteinID:
XP_071629346
LinkDB
All DBs
Position
3:complement(13389219..13392364)
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AA seq
506 aa
AA seq
DB search
MVVRQYQEELKYLEKINECCWRIKKGFQPNMKVEGVFYVNNTLERLMFDELRNACRPGAV
GGFLPGMKQIANVAALPGIVWRSVGLPDVHSGYGFAIGNMAAFDMDDPKSIVSPGGVGFD
INCGVRLLRTNLFEKDVLPVKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAACKMGIEEKGQICVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACAHIK
SQEGQDYLKAMAAAANFAWVNRSSMTFLSRQAFAKQFNSSPDDLDMHVIYDVSHNIAKIE
EHIVEGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
KETFGSTCHGAGRALSRAKSRRNLDYMQVLNKLEELGISIRVASPKLVMEEAPESYKNVT
DVVNTCHAAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtggtaaggcaatatcaggaggagcttaaatatttggagaaaataaatgaatgttgt
tggagaatcaaaaaaggctttcaacctaacatgaaggttgaaggagtgttttatgtgaac
aacacgttggaacgtttgatgtttgacgagttgcgcaatgcatgtcgaccaggtgcagtc
ggaggtttccttcctgggatgaaacagattgctaatgtggcagctctgcctggaattgta
tggagatctgtcggtttaccagatgtacactctggatatggctttgctattggtaatatg
gcagcattcgacatggatgatccaaaatcaattgtatcgcctggtggtgtgggctttgat
attaattgtggtgtccgtctattacgtacaaatttattcgagaaagacgttttaccagta
aaagagcaacttgcgcaaagcatgtttgatcacatcccagttggcgttggatctaaagga
attatacccatgaatgcacgagatttagaagaagctttagaaatgggaatggattggtct
ttgcgagaaggttacatttgggctgaggacaaagaacattgtgaggaatatggaaggatg
cttaatgccgatccatcaaaagtatcaatgagagctaagaaacgcggacttcctcaatta
ggtacattaggagctgggaaccattatgcggagattcaagttgtagatgaaatctatgat
aagtgggcagcatgtaaaatgggcattgaagagaaaggacaaatttgtgttatgatccat
tcgggcagcagaggatttggtcatcaagttgctacagatgcccttgtacaaatggaaaaa
gctatgaagcgtgacaatattgaaaccaatgacaggcagcttgcatgtgctcatattaaa
tctcaagaaggtcaagattatttaaaagcgatggcagctgctgccaattttgcgtgggtt
aacaggagttctatgacattccttagccgacaggcatttgcaaaacaattcaactcatct
cccgatgatttagatatgcatgtcatttatgatgtgtcgcataatattgccaaaatagaa
gaacacatagttgaaggaaaacagaagacacttttagttcatagaaagggatcaacaaga
gcctttccaccgcatcatcctttgattcctgtagattaccagttaacaggccaaccagtt
ttaatcggtggtacaatgggtacatgcagttatgttttaactggtaccgaacagggtatg
aaagaaacgtttgggtcaacatgtcatggtgctggtcgtgctctctcaagagcgaaatca
cgtagaaacttggattatatgcaagttctgaacaaattggaagagttaggcatatctatt
cgggttgcttcaccgaaattagtcatggaggaagcaccggagtcctataaaaatgtgaca
gatgttgttaatacttgccacgcagctggaatttccaagaaatgcattaaattacgacca
atcgcagttattaaaggataa
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