Temnothorax longispinosus: 139810799
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Entry
139810799 CDS
T10889
Symbol
Fand
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tln Temnothorax longispinosus
Pathway
tln03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tln00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139810799 (Fand)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tln03019
]
139810799 (Fand)
03041 Spliceosome [BR:
tln03041
]
139810799 (Fand)
Messenger RNA biogenesis [BR:
tln03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
139810799 (Fand)
Spliceosome [BR:
tln03041
]
Complex B
Other components
Prp19-related factors
139810799 (Fand)
Complex C
139810799 (Fand)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_15
TPR_12
Mad3_BUB1_I
RPN7
PPR
TPR_10
NRDE-2
DHR-2_Lobe_A
ARM_TT21_C
SNAP
Motif
Other DBs
NCBI-GeneID:
139810799
NCBI-ProteinID:
XP_071630785
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All DBs
Position
3:complement(14012244..14017051)
Genome browser
AA seq
842 aa
AA seq
DB search
MLQREDDEGNLYAFSEEDLPYEEEILRNPYSVKHWQRYIDHLKNTNSKNLNVVYERALKE
LPGSYKLWYNYLRQRVSQLKGRCITDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTEE
CYITRTRQVFDRSLRALPITQHHRIWPLYIHFLKKHNVYETAVRVFRRYLKLAPEDTEEY
IEYLISIERLDEAAVKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDAI
IRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE
ELSLKKLIEEAARNPTEEDDIKLELRLARLEHLMERRLLLLNSVLLRQNPHNVAEWHKRV
KLYEGQPHEIINTYTEAVQTVQPQLAVGKLHTLWVAFGKFYEENGQIEDARVVFEKATHV
PYTKVDDLASVWCEWAEMEIRHGNCKEALKLMHRATTMPARKVAYHDEAETVQMRLYKSL
KVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYALFLEENNYFEEAFRAYEKG
IALFKWPNVYDIWNTYLTKFLKRYGGTKLERTRDLFEQCLEHCPPKYAKALYLLYAKLEE
EHGLARHAMSVYERATNAVLPEERFDMFNIYIKKAADIYGVPKTRQIYEKAIEVLNDENT
REMCLRFAEMETKLGEVDRARAIYAHCSQICDPRVTSNFWQIWKEFEVRHGNEDTMREML
RIKRSVQAMYNTQVNMMSAQMLNNASNQVSDVPMDAMRLLDSKITSSTDKAADIKEGIKF
VRGVTEKDGKSESHVNNPDEIDIDIDDENDNDAEIEEDVPIEKQTIPSQVFGNLKAVQGE
ED
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgttgcaacgtgaggatgatgaaggaaatttatatgcctttagcgaggaggatttacca
tacgaagaagaaattttacgaaatccatattcagtgaaacattggcaacgttatatcgat
catcttaaaaatacaaacagtaagaatttaaatgtggtatatgaacgagcattgaaagaa
cttccgggcagttacaagctgtggtataattatctccgacaacgtgtgagtcaattaaaa
ggtcgatgtataacagatccattgtacgaagatgttaataatgcatttgaacgtgcttta
gtatttatgcataaaatgccacgcatatggatggattattgcacgctaatgactgaagaa
tgttacataacacgaacgcgtcaagtgtttgatcgatctcttagagcacttcctatcaca
cagcatcatcgtatatggccattatatattcattttttaaagaaacacaatgtttatgaa
actgctgttagagtctttaggagatatttaaagctagcaccggaagatacggaagaatat
atagaatatttgatatcgattgaaagactcgatgaagctgctgtaaaacttgcgcagatt
gtcaaccaggacgattttgtatcgaagcatgggaaatctaatcatcaactatggaatgaa
ttatgcgatttaatatcaaaaaatccttccaagataaagtctttgaatgtagatgctatt
attagaggcggtttaagacgttatacagatcagttgggacctctatggaattcattggca
gattattatgtccgaagtggtctcttcgaaagggcgagggatatctacgaagaagctata
cagactgttaccaccgttagagattttacacaagttttcgatgcttatgcacaatttgag
gaacttagtcttaagaagctcatagaagaagcagcgagaaatcctactgaagaagatgac
attaagttagagttgagactggcacgattggaacatctcatggaaaggagactattgttg
ctcaattctgtattattacgacaaaatccacacaatgtagcggaatggcataaaagagta
aaactttacgaagggcaaccacatgagataattaatacatacacggaagcggtgcagaca
gtgcaaccacaattggcagttggtaaattgcacacattgtgggttgcgtttggcaaattt
tatgaggaaaatggacaaatagaggatgctagagtagtatttgaaaaggcaactcatgtt
ccatacaccaaggtagacgatcttgcctcagtatggtgtgagtgggcagaaatggaaatt
agacacgggaactgcaaagaagctttaaaactcatgcatcgtgccactacaatgccagct
agaaaagtggcataccatgacgaagcggaaacagtacaaatgagattatacaaatcttta
aaagtatggtctatgtatgcagacttggaagaaagtttcggaacatttaagacctgtaaa
gcagtgtacgacaaaataatcgacttgaaaatcgcaactcctcaaattattatcaattat
gcactgtttttggaagaaaataattactttgaggaagcatttagggcatatgaaaaaggt
attgcgttgtttaaatggcctaatgtttatgacatttggaacacatatctcacaaaattt
ttaaaacgttacggtgggacgaaactagaacgtaccagagatttgtttgagcaatgctta
gaacattgtccaccaaagtatgccaaagccttatatttgttgtacgcaaagctagaagaa
gaacatggcttagcgagacatgccatgtcagtgtatgaacgtgcgacaaatgctgtcctc
ccagaagaaagatttgacatgttcaatatatacataaagaaagctgccgacatatatggt
gtgccgaaaactcggcaaatatatgaaaaggctatagaagtattgaacgatgagaacaca
agagaaatgtgtttacgattcgctgaaatggagaccaaattaggagaagtagatagagca
agagcgatatatgcgcattgtagccaaatatgtgacccgagagttacttcaaatttttgg
caaatttggaaagaatttgaagtcaggcatggaaatgaggatacaatgcgtgaaatgctt
cgaatcaagcgtagcgtacaagctatgtataacactcaagtaaacatgatgtcggcacaa
atgttgaataacgcatctaatcaagtatcggatgttccaatggatgctatgcgtttatta
gacagtaaaattacatcaagtacagacaaggccgctgatattaaagaaggcatcaaattt
gtacgtggcgtaacagaaaaggatggtaaatcagaatctcatgtgaataatccagatgag
attgatatcgacatagatgatgaaaatgataacgatgcagaaatagaggaagacgtgccg
atcgagaaacagactataccatcacaggtatttggtaatttaaaggcagtccaaggtgaa
gaagattga
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