Temnothorax longispinosus: 139811226
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Entry
139811226 CDS
T10889
Symbol
Clp
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
tln Temnothorax longispinosus
Pathway
tln03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tln00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139811226 (Clp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tln03021
]
139811226 (Clp)
03019 Messenger RNA biogenesis [BR:
tln03019
]
139811226 (Clp)
Transcription machinery [BR:
tln03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
139811226 (Clp)
Messenger RNA biogenesis [BR:
tln03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
139811226 (Clp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_3
zf-CCCH_2
zf-CCHC
zf-CCCH_4
Nab2-like_zf-CCCH_
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
139811226
NCBI-ProteinID:
XP_071631463
LinkDB
All DBs
Position
4:16749982..16752200
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AA seq
287 aa
AA seq
DB search
MECIVANVEHMRFDIEVALDEQYGALSLPFTGMDKSIAAVCQFYPRGTCSKGASCPFRHV
RGDRTIVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHIDPETK
VRDCPWYDRGFCRHGPLCRHRHVRRVLCMAYLAGFCPEGPNCKFMHPRFELPAVQDMQPK
EGKKVMITCHFCGEGGHKAIYCNKMPPDVREAQVRQELDNNSHTSHHHMNMHNGPPPPRG
PQKPLEEVTCYKCGQKGHYANKCPKGHLAFLSHAGSGGGAQNQNYRR
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atggagtgtatagtagcgaacgtggaacacatgcgatttgacatcgaagttgctctcgat
gaacaatatggggctctctcgttacctttcaccggcatggacaaatcaattgccgcagta
tgtcagttttatccgagaggcacgtgtagcaaaggagcttcctgtccatttaggcacgtt
cgtggcgatcggacaatagtatgtaaacattggttgagaggtctttgtaaaaagggtgat
cagtgcgaatttttgcacgaatacgacatgacaaagatgccagaatgttatttttattct
agattcaatgcatgtcacaacaaggaatgtccatttttacacattgatcctgaaactaaa
gtcagagattgtccatggtacgatcgtggtttctgcagacacggtcctttgtgtcggcat
cggcatgttagacgcgtcctgtgtatggcttacttagccggcttttgtccagaggggcca
aattgcaaattcatgcatccaaggttcgaattaccggcggtgcaggacatgcaaccaaag
gagggcaagaaagtgatgatcacttgtcacttttgtggagaaggaggtcataaagcaatc
tattgcaacaaaatgccacccgatgtgcgagaagctcaagtcagacaggagctcgataac
aattctcacacgtcgcatcaccatatgaatatgcacaatggaccaccgccgccgcgaggg
ccgcaaaagccactcgaagaagtgacgtgttacaagtgtgggcagaaaggtcattatgcc
aataaatgtccaaagggtcacttagcatttttgagtcatgcaggtagtggaggtggtgca
cagaatcagaattatcggagatga
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