Temnothorax longispinosus: 139811899
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Entry
139811899 CDS
T10889
Symbol
Hel25e
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tln Temnothorax longispinosus
Pathway
tln03013
Nucleocytoplasmic transport
tln03015
mRNA surveillance pathway
tln03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tln00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139811899 (Hel25e)
09122 Translation
03013 Nucleocytoplasmic transport
139811899 (Hel25e)
03015 mRNA surveillance pathway
139811899 (Hel25e)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tln03019
]
139811899 (Hel25e)
03041 Spliceosome [BR:
tln03041
]
139811899 (Hel25e)
Enzymes [BR:
tln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139811899 (Hel25e)
Messenger RNA biogenesis [BR:
tln03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
139811899 (Hel25e)
Spliceosome [BR:
tln03041
]
Complex C
Other components
EJC/TREX
139811899 (Hel25e)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
139811899 (Hel25e)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
139811899
NCBI-ProteinID:
XP_071632482
LinkDB
All DBs
Position
4:21013173..21019082
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AA seq
424 aa
AA seq
DB search
MADNDDLLDYEDEEQTEQVVDGSGDVPAKKEVKGTYVSIHSSGFRDFLLKPEILRAIVDC
GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTENQVYVLVMCHTR
ELAFQISKEYERFSKYMPHVKVGVFFGGLPIQKDEEVLKTVCPHIVVGTPGRILALVRNK
KLNLKHLKHFILDECDKMLELLDMRRDVQEIFRSTPHSKQVMMFSATLSKEIRPVCKKFM
QDPMEVYVDDEAKLTLNGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMAL
AQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYD
MPEDSDTYLHRVARAGRFGTKGLAITLVSDESDAKILNDVQERFDVNITELPDEIDLASY
IEGR
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggcggataacgatgatcttctggattacgaagatgaggaacagactgagcaggtagtc
gacggaagcggagatgttcctgctaagaaggaggtgaagggcacgtatgtctccattcac
agcagtgggtttagagacttccttctcaagccggagattcttcgtgccattgtcgactgt
ggctttgaacatccatccgaagtacaacatgaatgtatccctcaagcggttcttggcatg
gatatactgtgtcaagcgaaatcgggtatgggaaaaacagccgtatttgtattagctact
cttcaacagctggaattaacggagaatcaagtctacgtcttagtaatgtgtcatactcga
gaattggctttccaaatcagtaaagaatacgagaggtttagcaagtacatgccacatgta
aaggttggcgtatttttcggtggtttacctatccagaaagatgaagaggtcttgaaaact
gtatgtcctcatatcgttgtcggcactcccggtcgtatcctcgctcttgtacggaacaag
aaactgaatctgaaacacctgaaacactttatactggacgaatgtgacaaaatgcttgaa
ttattagatatgcgccgggacgtacaggaaatattcagaagcacaccgcacagcaagcaa
gtcatgatgttcagtgccaccctgtccaaggagatacgtcctgtctgcaaaaagttcatg
caagatcccatggaggtctatgtcgatgacgaggcaaagctcactttgaacggtctccag
caacattacgttaaattgaaggagaacgagaagaacaagaagttgtttgaactacttgac
gttcttgagtttaatcaggttgtcatatttgtgaagtctgtacaaagatgtatggcttta
gcgcaacttttgacggaacagaatttccctgcgatcgggattcatcggggcatgacgcag
gaggagcgactgtccagatatcaacagttcaaagatttccagaaacgtatcttagtggcg
acaaacttgttcggacgaggtatggatatagaacgtgtcaacattgtattcaactatgat
atgccagaagattccgacacatatctgcatagagtggcacgcgctggtcgttttggtaca
aagggtcttgctattacattggtgagcgatgaaagtgacgctaaaatattaaatgatgtt
caagaaaggtttgacgtaaatattacagaattaccggacgaaatcgatctcgcttcatac
attgagggacgatga
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