KEGG   Temnothorax longispinosus: 139811903
Entry
139811903         CDS       T10889                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
tln  Temnothorax longispinosus
Pathway
tln03018  RNA degradation
tln03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tln00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    139811903
  09123 Folding, sorting and degradation
   03018 RNA degradation
    139811903
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tln03019]
    139811903
   03041 Spliceosome [BR:tln03041]
    139811903
Messenger RNA biogenesis [BR:tln03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     139811903
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     139811903
Spliceosome [BR:tln03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    139811903
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 139811903
NCBI-ProteinID: XP_071632496
LinkDB
Position
4:complement(21019817..21021442)
AA seq 141 aa
MLPLTLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEVIDMVKEDIQMKSRGRGEMKGRGQNQRGRGGGGRGTFGRGGRGPAP
LGRGSGGTQVGNKSQNKPRPK
NT seq 426 nt   +upstreamnt  +downstreamnt
atgttacctctgactttgctgaaaacagcgcaaaaccaccccatgttggtggagctgaaa
aacggggagacgtacaacggccacttagtcagctgcgacaactggatgaacataaacctc
agagaggttatatgtacttcgagagatggagacaagttctggaggatgccggaatgctat
ataagaggcagcacaataaagtatttgagaattcctgacgaagtgatagacatggtgaag
gaagatatacagatgaaatcgaggggtcgcggcgagatgaagggtcgaggccagaatcag
aggggccgcggtggtggtggtagaggtaccttcggcagaggaggaagaggtccagcaccg
ttgggtcgtggaagtggtggcacacaagtcggcaataaatcacaaaataaaccgagacct
aagtga

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