Temnothorax longispinosus: 139812271
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Entry
139812271 CDS
T10889
Name
(RefSeq) DNA polymerase beta
KO
K02330
DNA polymerase beta [EC:
2.7.7.7
4.2.99.-]
Organism
tln Temnothorax longispinosus
Pathway
tln03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
139812271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tln03400
]
139812271
Enzymes [BR:
tln01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
139812271
DNA repair and recombination proteins [BR:
tln03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
139812271
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
139812271
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
HHH_8
DNA_pol_lambd_f
DNA_pol_B_thumb
HHH_5
HHH_3
HHH
Cdd1
NTP_transf_2
DUF3701
HHH_2
DUF4332
DUF7269
CCDC50_N
HEPN_AbiU2
MTPAP-like_central
DUF6932
DsrD
PTS_IIB
Motif
Other DBs
NCBI-GeneID:
139812271
NCBI-ProteinID:
XP_071633079
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All DBs
Position
4:complement(20888577..20890510)
Genome browser
AA seq
337 aa
AA seq
DB search
MGKRKATGNANNPNQDLCDFLSELADYERNVNKNVFKYNAYRKAAGTLGALTERVKSGEE
AKKLPGIGAKIAKKIDEFLQTGKLQKLEDIKKDDTNVAISLLARVTGIGPAKARELVDAG
VKTLEDLKKHQDKLTHHQKLGLKYFDDFEKKIPRAEIAQIEKILKNAIKELDRAYFVTIC
GSYRRCKEESGDIDVLVTHPDYTSKARDEKKKAVSLKAIVECLEKKRLITDTISLGSTKF
MGVCRLPEDESKPFRRLDIRLTFYDQYYCAILYFTGSDLFNKNMRAHALEKKYTLNEYAL
KRLTAEGCPGEAEKITSEEDVFKFLDLPYKEPKDRNV
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagaggaaggccacgggaaacgcgaataatccaaatcaggacctgtgcgacttt
ttgtcggaactggcagattatgaacgtaatgtcaataagaacgtcttcaagtacaatgcg
tatcgcaaggcggctgggacattgggcgccctgacggagagagtcaagagcggcgaggag
gcgaagaagctacctggaataggagcgaaaatcgcgaagaagatagacgaatttttacaa
actgggaaactgcagaagctggaggatattaagaaggatgatactaatgtcgccattagt
ctgttagcccgggtgactggcataggtcctgccaaagcgagggaattggtggacgctggt
gtcaagacgttggaggatctcaagaagcatcaggacaagcttacgcatcatcagaaactg
ggattgaagtacttcgatgactttgagaagaaaatacctagagcagaaattgcgcagata
gagaagatactgaagaatgccatcaaggagcttgacagggcttacttcgtgaccatctgt
ggaagttacagacgctgcaaagaggaaagcggcgatatcgacgttctcgtgacgcatcct
gattatacatcgaaagcgagggacgagaagaagaaggccgtatcgttaaaagcaattgtt
gaatgccttgaaaagaaacgactgattacggacacgatatcgcttggatctactaaattt
atgggagtgtgtcggttacccgaggatgaaagcaagcctttcagacgattggacatacgt
ctcacgttttacgatcaatattattgcgccatactctatttcacgggaagtgatctgttt
aacaagaatatgagagcacatgcgttggaaaagaaatacactctgaatgaatatgcactg
aagcgtctcacagctgaaggttgtccgggagaagcggagaaaattacatctgaagaggat
gtcttcaaattcttagatttaccctacaaagagcccaaagacagaaatgtgtaa
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