Temnothorax longispinosus: 139812657
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Entry
139812657 CDS
T10889
Symbol
L(3)72ab
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
tln Temnothorax longispinosus
Pathway
tln03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tln00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139812657 (L(3)72ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tln03041
]
139812657 (L(3)72ab)
Enzymes [BR:
tln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139812657 (L(3)72ab)
Spliceosome [BR:
tln03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
139812657 (L(3)72ab)
Complex C
U5 SnRNP specific factors
139812657 (L(3)72ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_30
AAA_22
AAA_16
HTH_61
DEXQc_Suv3
nSTAND3
PhoH
Motif
Other DBs
NCBI-GeneID:
139812657
NCBI-ProteinID:
XP_071633760
LinkDB
All DBs
Position
5:complement(238293..246480)
Genome browser
AA seq
2133 aa
AA seq
DB search
MADAAARQLQYEYKANSNLVLQADVRLIERRSRDEATGEVMSLVGKLDGTRMGDRAQRTK
PGKAEERKVKRQKRDEAQYDFTRMKGATLLSEGVDEMVGIVYRPKTQETRQTYEVLLHFI
QEALSDQPRDILCGAADEVLAVLKNDRLKEKEKKKETELLLGLLAEERFALLVNLGKKIT
DFGSDEKSTTNDENIDETYGINVQFEESSEEDDEDVYGEVRENDDEGDEGEEANDDRAIH
AENLGGTEEMKKEKPLHPLDIDAYWLQRRLSRIYDDAMMSQARAAEVLAVLKDAADDREC
ENQLVLLLGYDCFDFIKQLKKYRHTVAYCTMLASSQSESERQKIRNKMNDDPVLAKILRQ
LDTGKGEDDADETMEARSQRKRREENEDTGGPGGQVQGTRNLIDLEDLIFAQGSHFMANK
RCQLPDGSFRKQRKGYEEVHVPALKPKPFAENEKLHPIEQLPKYVQPAFEGFKTLNRIQS
RLYQTALESDENLLLCAPTGAGKTNVALLCMMREIGKHINADGTINADEFKIIYVAPMRS
LVQEMVGNFRKRLSTYNLTVSELTGDHQLTREQIAATQVIVCTPEKWDIITRKGGEKTFT
SLVRVIIIDEIHLLHDERGPVLEALVARTIRNIETTQEDVRLVGLSATLPNYQDVAAFLR
IKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNEIVYEKTMEHAGRNQVLIFVH
SRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEAEQVKNQELKDLLPYGFAIHH
AGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELGA
LDVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLLNQQLPIESQLISKMSDMLNAEVV
LGTIQNIRDAVTWLGYTYLYIRMLRCPNLYGISHDKLKQDPLLELHRADLIHSAALGLDR
SGLIKYDRKSGNFQATELGRIASHYYCTHETMSTYNQLLKRTLSEIELFRVFSLSGEFKN
INVREEEKLELQKLMERVPIPVKESIEEPSAKVNVLLQAYISQLKLEGFALMSDMVFVTQ
SASRLMRAIFEIVLFRGWAQLADKCLSICKMIDRRMWQSMSPLRQFRKMPEEIVKKIEKK
NFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLGLSTHIQPITRSTLRVVLTITP
DFQWDEKVHGMSEAFWILVEDVDSEVILHHEYFLLKAKYAADEHVIKFFVPVFEPLPPQY
FLRVVSDRWIGAETQLPVSFRHLILPEKNLPPTELLDLQALPITALRNAKFENIYSDFPQ
FNPIQTQVFNAIYNSDDNVFVGAPTGSGKTTIAEFAVLRLLTQNPEGRCVYMVSKEALAE
LVYAAWAAKFGQQLGRKVVLLSGETGTDLKLLAKGQIIITTADKWDVLSRRWKQRKNVQN
IQLFIVDELQLIGGEEGPVLEVACSRARYISSQLDKPTRIIALSASLADAKDAAQWLGAP
AAATFNFHPSVRPVPLELHVQGINVTHNASRLAAMAKPVYNAILRHAAHKPVIVFVPTRR
QARLTAIDLLTFTAAEGQPSKFFHAEEADIKPFLDRMTDKTLKETLSQGVAYLHEGLSAD
DRRLVEQLFDSGAIQVAVATRDLCWGLSISSHLVVVMDTQCYNGKTHAYEDYPITDVLQM
VARANRPLEDEDAKCVLLCQSSKKDFFKKFLNEPLPVESHLDRRLHDHFNAEIVTKTIEN
KQDAVDYLTWTFLYRRLTQNPNYYGLQGVTHRHLSDHLSELVESTLTDLEQAKCVAVEDE
MDTLPLNLGMIAAYYYINYATIELFSLSLNNKTKIRGLLEIISAAAEYESVPVRQREENL
LRSLAARLPHAPQAARMADPHVKAQLLLQAHLSRIQLGPELQKDTELVLGKAVRLIQACV
DVLSSSGWLAPAVAAMELAQMVTQAMWSKDSYLKQLPHFTAETIKRCTDKGVETVFDVME
LEDDDRNRLLQLTDAQMADVAKFCNRYPNIEMSYEVQDKDKLHSGGTVNVIVQLEREDEV
IGPVVAPFFPQKREEGWWVVIGDPKSNSLLSIKRLTLQQKAKIKLDFVAPAPGQHSYTLY
FMSDAYLGCDQEYKFTINVGEYETDASSGSDSE
NT seq
6402 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgctgctgcgcgtcaattgcagtacgaatataaagcgaattccaatctcgtt
ttacaagctgacgtccggttaatagaaagacgtagccgagatgaggctaccggcgaggtt
atgtccctcgtgggaaaattggatggtacacgtatgggtgatagggcccagcgtaccaaa
cctgggaaggcggaagagagaaaagtcaaacgtcaaaagcgcgatgaggcgcaatatgac
ttcacacgtatgaaaggagcaacattattatccgaaggtgtggatgaaatggttggtatt
gtatatcgtccgaaaacacaagagacgcgtcagacttacgaggtattgctccatttcata
caagaagctttgagcgatcagccacgcgatattctttgtggtgcggctgacgaagtacta
gctgtgttgaaaaatgatcggcttaaagagaaagagaagaaaaaagaaacagagctttta
cttggtttattagcggaagaaagattcgcgctgcttgtaaaccttggtaagaagattacg
gattttggcagtgacgaaaaaagtacgaccaacgatgagaatattgatgaaacatatgga
atcaatgtacagtttgaggagagtagcgaagaggacgatgaagatgtgtatggagaagtt
cgagaaaatgatgacgaaggagatgagggtgaagaagccaatgacgatagagctattcat
gcagaaaatttgggtggaacagaagaaatgaagaaagaaaaaccgttacatccattagat
atagatgcgtattggttgcaaagaagattaagtaggatatatgacgatgctatgatgtca
caagcgagagctgctgaggtactagctgtcttgaaagacgccgcggacgatcgtgaatgc
gagaatcagcttgtacttctattgggctatgactgctttgactttattaaacaacttaaa
aaatacagacatacagttgcgtactgtacaatgttggcctcatcgcagtctgaatcagaa
agacaaaagatccgtaacaagatgaacgatgatccggttcttgccaaaatcttacggcaa
ttagatacgggtaaaggcgaagacgacgctgacgagacaatggaagcaagatcgcagcgc
aagaggcgggaagagaatgaagatacaggagggccagggggacaagtacaaggtacaaga
aacttgatagatctggaggatctgatattcgctcagggaagtcactttatggccaacaaa
cgttgccaactaccagacggcagttttcgaaaacagcgaaaaggatacgaagaagttcat
gttcctgctttaaaaccgaagccgtttgcagaaaatgagaaactacatccaattgaacaa
ttgcccaagtatgtgcaacctgcttttgaaggcttcaagacattgaatcgcatacaaagt
cgcttatatcagacggcgttggagagtgacgaaaatctgctgctgtgtgctccaacagga
gctggtaaaaccaatgtggcactgctgtgcatgatgcgagaaattggaaagcatataaac
gctgatggtacaatcaatgcagatgagttcaaaatcatttatgtcgctccgatgcgttct
ctggtgcaagaaatggtcggaaattttcgcaagcgattgtcaacatacaatctgactgtc
tccgaattgacgggtgatcatcagttaacgcgagagcaaattgccgctactcaggtgata
gtgtgcacgccggaaaaatgggatatcataacgagaaagggtggcgagaaaactttcacg
tcattagtacgcgtgattattattgatgagattcacttattgcacgacgagagaggtcct
gtcctagaggcgctggtggcaagaacgatacgaaacatcgaaactactcaggaagatgtg
cgtctagtcggcttgtcggccacattacccaattatcaagatgttgcagcgtttttacgc
attaaaccggaaacgggactgttttatttcgacaacagttttcgtcctgtagctttggaa
cagcaatatatcggcgtcaccgaaaagaaagcattgaaacgtttccaggtgatgaatgag
attgtctacgaaaagaccatggaacacgccggcaggaatcaggtactgatattcgtgcac
tcgcgtaaagaaaccggaaaaacggcacgcgctattcgagacatgtgtctggagaaggat
actttgggtcaatttctcagagaaggttccgcgtcgatggaggttctaagaacagaggcg
gagcaagtgaaaaatcaggagcttaaggatctgctgccatacggttttgcgattcatcac
gctgggatgactcgggtggatcgtaccctggtagaggatctcttcgccgatagacacata
caagttctcgtgtctacagcaactttagcctggggcgtcaatttaccggctcacacggtt
attatcaagggtacccaggtatacaatccggaaaagggtagatgggtcgagctgggcgct
ttagacgtactgcaaatgttaggacgagccggtcgaccgcagtacgacaccaaaggcgag
ggcatcctcatcacgaatcatagcgagctacaatattatctgtcgctcttaaatcagcaa
ctacccattgaatcccagttaatcagcaagatgtccgacatgttgaacgcggaggtggtg
ttaggtacgattcaaaatatcagagatgcggttacctggcttggttacacttatctttac
attagaatgcttcgctgcccgaatctatacgggataagtcacgacaagttgaagcaagat
cctttattggagctgcatagagctgatctaatccactcggcggcactcggattggatcgc
agcggcttgatcaagtacgatcgcaagtccggcaattttcaggcgaccgagttgggcaga
atagcgtctcattattattgcactcacgaaacaatgtctacgtacaatcagttgttgaag
cgcacgttgagcgagatagaattgttccgggtgttctcactgtcgggcgagttcaaaaat
ataaatgtcagggaggaagagaagttggagctgcagaaactgatggaaagggtgccgata
ccggtgaaggaaagcatcgaggaaccgagcgcgaaggtgaatgtgctattgcaagcgtat
atttcacaactgaaactcgagggattcgctctcatgtccgatatggtattcgtcacgcaa
tcagcctcgcgtctcatgagagctatcttcgagattgttctgttccgcggttgggcacaa
ttggcggacaagtgcctgtccatctgcaagatgatcgatcgcaggatgtggcagtcgatg
tcgcctctcagacaattccgcaagatgccggaggaaattgtgaagaagatcgagaagaaa
aacttcccatgggagaggttgtatgatttggggcccaacgagatcggcgaattgattcgc
gtgccgaagctgggcaagaccattcacaaatacgtccaccagtttccgaaactgggcctt
tccacgcatatccaaccgatcacgcgttccactttaagagtcgtgctgactatcaccccg
gacttccagtgggacgagaaggttcacggtatgtccgaagcattttggattttagtcgag
gacgtagattcggaggtaatattgcatcacgagtactttttgctcaaggccaaatatgcg
gctgacgaacatgtgataaaattcttcgtgccagtcttcgagcctctgccaccacagtac
tttttgcgcgtggtgtctgatcggtggatcggcgcggagacgcaattgcccgtaagcttc
cgacatctgatattgcccgagaagaatctaccgcctacggaattgctggatctgcaggcg
ctgccgataacggcgttacgaaatgccaaattcgagaacatctattctgattttccgcag
tttaacccgatccagacacaggtgttcaatgcgatctacaattccgacgataacgtgttc
gttggagcgcccacaggttcaggaaagacgaccatcgcggaatttgcggtactaagatta
ctaacgcagaatccggaaggacgatgcgtatatatggtgagcaaggaagctttagccgaa
ttggtctacgccgcgtgggcggcaaaattcggccaacagctgggaagaaaagttgtcctg
ctgagcggtgaaacgggaacggatttgaagctcctggccaaaggccagatcattatcacc
acggcggacaaatgggacgtgttatcacgcaggtggaagcagcggaagaacgtgcagaac
atccagctgtttatcgtggatgagctgcagctgatcggcggtgaggagggcccggtgcta
gaagttgcgtgttcgcgagcccgttatatctcttcgcagctcgacaaacccaccaggata
atagcgttatcggcctcgttagccgacgccaaagacgcagcacagtggttgggagcaccg
gcagcagcaaccttcaattttcatccttctgtgcgaccggtacctttagagctgcacgtg
caaggtataaacgtcacccacaacgcgtcgagattagccgccatggcaaaaccggtgtat
aacgcgattctccggcatgccgcgcacaaaccggtgatcgtatttgtacccactcgtcgg
caggcgagattaacggccatcgacttgctaacattcacggcggccgagggtcaaccctcg
aaattcttccatgcagaagaggctgacattaagccgttcctcgatcgcatgaccgacaaa
acgctaaaggaaactctgtcgcaaggtgtggcttaccttcacgagggtctatcggccgac
gatcgtcgtttagtcgagcaactgttcgacagcggagctatccaagtggcggtcgcgacg
agggatctctgttggggtttatctatcagctcccaccttgttgtagtcatggacacgcag
tgttacaacggcaagacacatgcttatgaagattatccaatcacggacgtgctgcaaatg
gtggcgcgagctaatcgcccactagaagacgaggacgccaagtgcgtgctactgtgtcaa
agctcgaaaaaagatttcttcaagaagttcctgaatgagccactaccagtggaaagccac
ttggatcgccggctgcatgatcacttcaatgcggagattgtgacgaagacgatcgaaaac
aaacaagacgcggttgactacctcacgtggactttcctgtaccgacgactcactcagaac
cctaattactacggtctgcaaggcgtcacgcatcggcacctatcggatcatctgtccgag
ttggtcgagagtacattgaccgacctagaacaagccaagtgtgtcgccgtagaagacgag
atggatactttgccgctcaatctgggaatgatcgccgcctactattacatcaattacgcc
accatcgaattgttcagtctgtctctcaacaataagacgaagatcaggggtttgttggag
attatttcagcagctgctgagtacgagagcgttccagtgcgacaaagagaagagaattta
ctgagaagtttggctgcgcgtctacctcatgcgccacaagccgctagaatggctgatcct
cacgtgaaagcgcagcttctgctgcaagctcacttgtcgaggatacagctaggtccagaa
ttgcagaaggacaccgaactggtgctgggcaaggccgtgaggctgatacaagcttgcgtc
gacgtgctgagctcttctggatggttggcacccgccgtcgccgctatggaacttgcgcag
atggtgacgcaggcgatgtggtccaaggattcctatttaaagcaactgccgcacttcaca
gcggagaccatcaaacgctgcaccgacaaaggcgtggagaccgtgttcgacgtgatggag
ctcgaggatgacgatcgaaatcggctgttgcagttaacggatgcgcagatggcggacgtg
gctaaattctgtaaccggtatcctaacattgagatgtcgtatgaggtacaagataaagac
aaattgcacagcggcggcacggtaaacgtgattgtacaattggaacgggaggacgaggta
attggaccggtagtcgcgccattcttcccgcaaaaacgtgaggaaggctggtgggtggtg
atcggcgacccaaagagcaactccttgctctctatcaagcgcctgacgttacaacagaag
gcaaagatcaaactggatttcgttgctccggcacccggccagcactcctacaccctgtac
ttcatgagcgacgcttatctcggttgcgatcaagaatacaaatttactatcaacgtcgga
gagtacgaaacggatgccagttccggttcggattccgagtaa
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integrated database retrieval system
