Temnothorax longispinosus: 139814050
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Entry
139814050 CDS
T10889
Name
(RefSeq) probable ATP-dependent RNA helicase DHX34 isoform X1
KO
K20101
ATP-dependent RNA helicase DHX34 [EC:
5.6.2.6
]
Organism
tln Temnothorax longispinosus
Brite
KEGG Orthology (KO) [BR:
tln00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tln03019
]
139814050
Enzymes [BR:
tln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139814050
Messenger RNA biogenesis [BR:
tln03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
139814050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2_DHX34
Helicase_C
OB_NTP_bind
DEAD
HA2_C
AAA_22
ResIII
AAA_19
HA2_N
nSTAND3
PIMT_C
Cas_CXXC_CXXC
Motif
Other DBs
NCBI-GeneID:
139814050
NCBI-ProteinID:
XP_071636103
LinkDB
All DBs
Position
6:8391997..8450571
Genome browser
AA seq
1207 aa
AA seq
DB search
MSSRNGSGSGIKGRSFSGERRREDDRCYVKKHLDDRKSDKRSSSTSSTRSARARAQSGRE
THGLFPHARTSGTSSSESRHSEDRDRVPPLNSLNEAEDMYFSKCKHELNKIFIANPNLVH
DVVDFWKFVEKYESVTVNKRLGDSDESVANFARNRTSIGLPEKYHKSHCLNLKLALSYGE
LFARVPEAKSSLTESRLLKFRDVILLYLDFKQKEKFAKLKRLRDAQANLPVARYKEDIIE
MVKMEKVIIVAGDTGCGKSTQIPRYLYEAGFRKIACTQPRRIACISLAKRVAFETLSENL
SRVGYQIRFEKQRNQETNITFITEGLLLRQVSGESTLSAYDVIVLDEVHERHLHGDFLLG
IMKCIINQKPDLKLVLMSATINIQLFSTYFAKENVKIIEVPGRLYSIQLFYRPVTVEDLR
YKNDRFNPSPYVQIMQIIDQKYPVDEKGDLLIFLSGISEITAVVDAAKEYSIKKNNWIVL
PLHSTLSIVEQDKVFDYAPDGVRKCIVATNIAETSITIDGIRFVADSGKVKEMSYDPSCK
MQRLKEFWISKASAEQRKGRAGRTGPGVCYRIYSEEEYKTLEKYSTPELQRVPLDSSLLQ
MIAMGLPDARKFPFIEPPPANSLENAILSLKDHDALTDNEKITCIGKTLARLPVDIAIGK
MLIMGSIFHQVEPVLSVAAALSIQTPFTNRAYRDTECETSRKKLESDHGDPITLLNAFKE
WLEVKQENSQEYRSSNNSSRKWCRRRGLEEQRFYEMTKLRAQFKDLLQDCNLLKSLPEPN
SSMTSAERAIRHGELKLLKSLKRTYKQSEPKRRKRLKVETFDIHVEDNDEDNGELDIKDI
EFRMRNDSSQVQNLLTASTACSYKDLTMLKLILCSGLYPQFACADEFNYCKSISEQLFHT
KAKPYVALHPMSFFGNHPQVLQIDEADITPMPGFKSKTPVSSKHQILAYLSLLETTKPYL
VNTLRMPAAQTLLLFAHEIDTNSTFSIIACDSWLMLEFPVPDSGQVLLLKAAKLRNKWDF
LLNQQLQGSDSADDERKDFSKVEQSLTYDVIEYMHTTIPYTIRRLLPADLKIMYVGNGNN
DTSIEPNPFQSDFKSIPNIIKGGACVTNSITYNCIKESTWSKQLRVEMQETEWHCENCDL
RARLSSIEKLLHQNSCTITDTISVDKKSENIIHKANSQAYECPDCSLTLYFTPIEILKHK
KLHIKAS
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgaggaacgggtccgggtccgggataaaaggacgttcgttcagtggcgaaagg
aggcgtgaggatgacaggtgttacgtaaaaaagcacctcgacgatcgcaaaagcgataaa
cgcagctcctcgacgtcctcgacgaggtccgcgcgagcgcgagcccaaagcggtcgagaa
acgcacgggttgtttcctcacgcgagaacgtctggaacgtcatcctcggaaagtcgtcac
tcggaagatagagatagggttcctcctctcaacagtctcaacgaggcggaggatatgtat
ttcagtaaatgtaagcacgaattgaataagattttcatagcgaatccgaatctcgtccac
gacgtcgtggacttttggaaattcgtcgagaaatacgagtccgtgaccgtcaacaagcga
ttgggcgacagtgacgaatctgtggccaatttcgctcgaaatcgaacgtccatcgggctc
ccggaaaagtatcacaagtcccattgtctaaacttgaagcttgctttgtcctacggggaa
ttgtttgccagagtcccggaggcaaaatcttcgttgaccgaatctcgactgctcaagttc
cgagacgtgatactcttgtacttggactttaagcaaaaggagaaattcgccaagttaaag
aggctccgagacgcacaagccaacttgccggttgcgcgatacaaagaggatattatcgag
atggtaaagatggagaaagtaatcatcgtcgcaggagacactggttgcgggaaatctact
cagatccctcgatatttgtacgaagctggtttccggaagattgcatgtacgcaaccccga
agaatagcgtgcatctcattagcgaaacgagtagctttcgaaacattgagcgagaatctg
agtagagttggctatcagatacgttttgagaaacagaggaatcaagagacaaacattacg
tttataacagagggcttattgttgcgccaggtgtcgggtgaatcaactttatccgcatac
gacgtgatagtcttggacgaggtacacgaacgtcacctgcatggggattttttattgggc
attatgaaatgcatcattaatcaaaaacctgatttgaaattagtattaatgtccgccacc
attaatatacaactttttagtacgtatttcgcaaaggaaaatgttaaaataatagaggtc
cctggcagattgtattccattcaattgttctatcgccctgtaaccgtagaagacctcaga
tacaaaaatgatcgatttaatcccagtccatatgtgcaaataatgcaaataattgatcaa
aaatatccagtcgacgaaaagggtgatttattaatattcttgagcggaataagtgaaatt
actgcagtcgtagatgctgccaaggaatatagtataaagaaaaataactggatagtttta
ccacttcatagtactctctctatcgttgaacaagacaaggtatttgattatgcacctgac
ggtgttaggaaatgcattgttgcaactaatatcgcggaaacttccattaccattgatgga
atcagatttgtcgctgatagtggaaaagtgaaggaaatgagttacgatccgtcgtgtaaa
atgcaaagattgaaagaattttggataagcaaagccagtgcggaacaaagaaaagggaga
gcaggcaggactggacctggggtttgttacagaatttattcggaggaagagtacaagacg
ttggaaaaatattcaacaccagaactacaacgtgtacctttagattcttcactattgcag
atgatagcgatgggacttcctgatgcgcgaaagtttccatttatagaaccaccaccagcc
aatagtctagaaaacgctatactatccttaaaagatcacgacgcacttacggataacgaa
aagatcacgtgtatcggtaaaaccttggctcggctgcccgttgatattgcgatagggaag
atgttaataatgggatccatttttcatcaggtggaacccgtgttatccgtggccgctgct
ctaagtatacaaacaccgttcactaacagggcttacagggataccgaatgtgagacatct
agaaagaagttggaatctgatcatggtgatccaataacgttattgaatgcatttaaagaa
tggctggaagtgaaacaagaaaattcacaagaatatagaagcagtaataacagcagcaga
aagtggtgcagaagaagaggtttggaggaacaacggttctacgaaatgacgaaattgagg
gctcaatttaaagacttgctccaagactgcaatttactcaagagcctcccagaaccaaat
tcttccatgacgagtgcagaacgtgcgataaggcatggagaattgaaacttttgaaatct
ctcaaaagaacttacaaacaaagtgagcctaaaaggcgtaaacggttgaaggtagaaaca
ttcgatatacacgtggaggataatgacgaggataatggagagctcgacataaaagatata
gaatttcgaatgaggaacgactcgagtcaggtgcagaatcttttaacggcgtctaccgca
tgtagctataaagatctgacaatgttgaagttgatattatgtagtggtttatatccacaa
tttgcttgtgccgacgagtttaattattgcaagtctataagtgaacaattatttcacaca
aaagcgaaaccgtacgttgctttgcatccaatgagctttttcggaaatcatccacaagtt
ctgcaaattgatgaagcggatataacgccaatgccaggatttaagagcaagactcctgta
agctcgaaacatcagatattggcgtatctatccctcttagaaactacaaaaccgtatctg
gtaaatactttaagaatgcctgctgcacaaacgttgctattatttgcgcatgaaatagat
acaaatagtacgttctccataatagcatgcgattcgtggctgatgttagagtttcctgtt
cctgacagtggtcaagttttattattgaaagctgccaaattaagaaataaatgggatttc
ttattaaatcagcaattacaaggatccgacagtgctgacgacgaaagaaaagattttagt
aaagttgagcaaagtcttacgtacgacgtgatcgaatatatgcatactacgataccatat
accataagacggctgttaccagccgatctgaaaataatgtacgttggcaacggcaataat
gacacgagtatagagcctaatcctttccaatccgattttaaaagtataccaaacataatt
aaaggtggagcttgtgtgacaaatagtatcacgtataattgcataaaagaaagtacgtgg
agtaaacagctacgtgtagaaatgcaagaaaccgaatggcattgtgaaaattgtgatctt
cgagcacgtctatcgagtatcgaaaaacttctacatcagaactcttgcacaatcacagat
acgattagtgtcgataaaaagagtgaaaatatcatacataaagctaatagtcaagcatac
gaatgtcctgattgttcgctaacattatatttcacgcctatcgaaatattgaagcataaa
aaattgcacatcaaagcaagctaa
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