Temnothorax longispinosus: 139816473
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Entry
139816473 CDS
T10889
Symbol
Not1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tln Temnothorax longispinosus
Pathway
tln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139816473 (Not1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tln03019
]
139816473 (Not1)
Messenger RNA biogenesis [BR:
tln03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139816473 (Not1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
139816473 (Not1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
139816473
NCBI-ProteinID:
XP_071640081
LinkDB
All DBs
Position
7:complement(19816316..19828784)
Genome browser
AA seq
2403 aa
AA seq
DB search
MNLDSLSFTLSQISYLVANLSKKNFEDSCREISGLVQWHGLEAERHLFRCLFSSVDFSKG
EPSDSSAKDYFQAKLLKQECNSLLSKPAFISTLCFAIDNPLHHQKSLNPSPKFFVNLKKT
LGLTLVQEVAFAIALQHSENAERRSLALEHTQKQLPELIKNYINSETSSKHHEGGLHDSL
PQVLHLILSQALHTANPYNLPTETKEKFLKHLRRDFPRELVPVVLAPFLYPEDEETLQFN
IELNMAVTQMDNNTLVELIMELGYSFTSSIEECRSSLTGLGPREISPACVARVLSQMART
CSNLDDAGGLQTFWGNSTASQDSNKEKSSDSTIPTTWNIEIFVLTLKEIQSTLSWNEVIV
KLDHPEFMIKDRQSLNLLITGLKLGLQHQGYPPDMFPVELLYRHWENIDGQFSLIQQILK
CPDIFCFADYPYHSVTVDVLKAAPEADSKEGQTWRSLNIVELLLHMAERGLFTPVQEIFK
WPLQHCPDVLILALLQINPPFTILRQEMFTTLLPIFLGNHPNSAVILHHAWHSNNTKIKS
LIMHAMAEWYTRGDHDQTRLSRILDVAQDLKALSALLNSQSFPFVIDLACLASRREYLKL
EKWLTDKIRDHGEVFVAACVKFLQRRCPQVMGPGIKEDPTVPKASQLPQETLTTILACLQ
VCTGSVSQELSEVILTMVQNCSIMLSKSTMNRPPPPGVLRHRGLEPFNPATLGSQLFSSK
QVDSLGNLGSSLASMGLGTGLGPPSSSAFNLPGALGPLVSAPGSPSRLMGPSPSPFPMLP
LSSQLHSGPVGTQGPSVLPGGTIGGLGRLGPPAGIEKARMPETPNLFPDMGQNVSKEVED
EANSYFQRIYNHPPHPTLSIDEVLDMLKKFQDSGIRREREVFNCMLRNLFEEYRFFPQYP
EKELQITAQLFGGIIERGLVNSYMTLGLALRFVLDALKKPEGSKMYYFGITALDRFKSRL
KEYQTYCEHVRTIPHFSEFPPHLVEYIEYGLQGQEPPSRPQGSKTLAAMLAPVTTPYKTM
TTTTVTTSTTQAKPSTTPTTSLTARASMPSVANATNIDTLLVATDKEEKITTPPEALQDK
TAFIFNNLSQLNLQQKCDEIRDIVTEEYWPWMAQYLVMKRASIELNFHALYSNFLDCIKL
PEVNKMVTRETFRNIKVLLRSDKGIANFSDRSLLKNLGHWLGMLTLGRNKPILQIDIDLK
SLLVEAYHKGQQELLYVVPFVAKVLESCAKSRVFRPPNPWTMAIMNVLAELHQEPDLKLN
LKFEIEVLCKNLSIDVGELKPVIYLKDPEKLRNLEYQLSHPNKKAETTNNQQQPQGPIEE
LVGPTTSGTINPQTAPPVNTTPSLPAGPPEPRFNYMDISVTGIANISQHITANNQLPLFQ
THPHLKQFIRPAVERAIQEWIHPVVDRSIKIALTTSEQIVRKDFALDPEDVRMRTAARHM
VRNLTAGMAMITCRDQILASISTNLKQAFLTALIGTTPQQKELVEQAASVVAADNMELAC
AFVQKTAIEKAIPEMDKRLLNEIELRKIARQEGKRYCDPIVKYQAERMPEQIRLKMGAVT
PQQMAVYEEFSRNIPGFLPLSERDTQALFIPKPISEAPITAFTPNSAVAVATAQQVAAYA
TVAVSNDEMGAMLEKLATEVEVLLAAMAPVAPPPQHAILHSLLESIVVTRRSRDANAALA
LLKKAVEGLLDGPMFNSGVIDTDSLIQRYREVHLRILKCLQDPRAYGMQWTNKNVTRCLI
ECREDYRYNFEAVDYLIRSHLISLPQYDLAIAQAIDSGNVLATVFAMQLVQLYLIDERQA
THVTETDLYHTIEILARLSVHRSLPEGISGFRLTNLVESLRANVDSGVLGDRAPAGPTAH
IHSGILQVRARDFDDPPGLMDKTEYLLREWVQMHHNPQYARDPTKAFSIFVHQMNIHGIL
KTDDLITRFFKLSTQMCVDLCYRTLSETGLAPSIIRAKCFHSLDAFVRLVALLVKHSGDA
SNTHTKINLLNKVLGIVAGVLLQDHEIRGADFQQLPYHRIFIMLFLELCAPEPVLEAVNF
QVLTAFCHTLHILRPAKASGFCYAWLELVSHRVFIGRMLAITPQQKGWGMYAQLLIDLFK
YLAPYLRNAELAKPVTSLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLIL
SAFPRNMRLPDPFTPNLKVDMLQEISHAPRVLTNFASTIQPNSFRKELDSYLKARAPVTF
LSELRSNLQVSQEAGVRYNIQLMNALVLYVGTQAIQFIRSKGHTPNMSTIAHSAHMDIFQ
NLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTILYLFAEANTEAIQEQITRVLLERL
IVNRPHPWGLLITFIELIKNPTYKFWSHEFVHCAPEIEKLFESVARSCMVQKQIPTAETE
IPE
NT seq
7212 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttgtcttttactttgtcacagatcagttatttggttgcgaatttg
agtaagaaaaatttcgaggacagctgccgggagatatcgggcttggtgcagtggcatggt
ctagaggcagaacgacatttgttccgctgtctgttctcgagcgttgacttttccaagggc
gagccgtcagattcgagtgcgaaagattatttccaagcgaagctgttgaaacaggagtgc
aacagcttattgagcaagcctgcttttatatctactttgtgctttgctatagataatcct
ttacatcatcaaaagtcactgaatccctcccccaagttttttgtcaatttgaagaaaaca
cttggcctgaccttggtacaggaggttgcgtttgcgattgcgttgcagcactcggagaac
gctgaacgtcgttctttagccttggagcatactcagaagcaactgcctgagctgataaag
aattacataaactctgagacgagtagcaagcatcacgagggtggtttgcacgactcgttg
ccccaggtccttcatctgatactcagccaggctctccatactgccaatccgtataatcta
cctacggaaacgaaagaaaagtttcttaaacatttacgacgcgactttccccgcgaactg
gtgccagtggtgctagcaccattcctgtatccggaagacgaggaaactctgcaattcaac
atcgagttaaacatggccgtcactcagatggataacaacactcttgtagagttgattatg
gaattaggatatagctttactagtagcatagaagaatgtcgatcgtcgttaacgggttta
ggccccagggagatatccccagcatgtgtcgctcgtgtgctgtcacaaatggcacgtacc
tgcagcaatctcgacgatgctggaggcctacaaacgttttggggcaactcaactgcctcg
caggactccaataaggagaaatcatcggacagtaccattcccacaacatggaacattgaa
atattcgttctaacactgaaagagatacaatctacattgtcttggaacgaggtcatcgtg
aagttagatcatccagagtttatgatcaaggacagacaaagcttaaacttattgattacg
ggtctcaagctgggcctgcaacatcaaggatatccgcccgacatgtttcccgttgagctt
ctgtatcggcactgggaaaatatagacggccaattttctctaattcaacaaatcctcaag
tgcccggacatattttgcttcgctgattatccgtatcattcggtgacggtcgatgtatta
aaagcggctcccgaggccgatagcaaggaagggcaaacgtggcgatccttgaacatagtc
gaattgcttttacacatggccgaaagaggcttgttcactcctgtacaggagatctttaaa
tggccgctccaacattgcccggacgtacttatcttggcattactgcagatcaatccacct
ttcacaatactgaggcaggagatgttcactacgctattgccgatctttcttggcaatcat
ccgaattctgctgtgatactgcatcatgcgtggcattctaataatactaagataaagtca
cttataatgcatgctatggcagaatggtatacgcgtggtgatcatgatcaaacgagatta
tcgcgaatcttggatgtcgcgcaagatttgaaagcgctctccgctttacttaattcgcag
tcgtttccatttgtcattgatctcgcctgtttggcctctcgacgagagtatctaaaactg
gaaaaatggttaacggataagatcagagatcacggtgaagtttttgtcgctgcatgtgtc
aagttcctacaacgacgatgccctcaagtcatgggccctggtatcaaggaagatcctaca
gttccaaaggcaagccaactgccgcaggaaacactcactacaatcttggcttgcttacaa
gtttgcaccggaagtgtctcccaagaactctcggaggtaatattgacaatggtgcagaat
tgcagcataatgctgagtaagagcaccatgaacagaccaccaccgccaggagtcctgaga
catcgaggattagaaccgttcaatccggcaactttaggaagccaactattttcctcaaag
caagtggactctcttggaaatcttggttcaagtcttgcttccatgggtctcggcacgggt
cttggacctccaagtagctccgcgttcaatttgcccggcgcgctaggtcctctggtctcg
gcgcccggatctccctcacgactcatgggaccttctccaagtccatttcctatgttgccg
ttatcttcgcaattacattctggtccggttggtactcaggggccatctgtcctcccgggt
ggtacaataggtggactgggacgcctcggaccgccagctggtattgagaaagcgagaatg
ccggaaacccccaatttgttcccagacatgggacaaaatgtctccaaagaggtcgaagac
gaagctaatagttattttcaacgtatatacaatcatccaccgcatccgactttgtcgatc
gacgaggtgctcgacatgttgaaaaaatttcaagactctggtatcagacgggagagagag
gtgtttaactgtatgctgcgaaatttgttcgaagaatacagatttttccctcagtatccg
gaaaaggaattgcaaataacggcacaattattcggtggaattatcgagagaggtcttgtc
aacagttacatgacacttggattagcactgcgattcgttcttgatgcgcttaaaaaaccc
gagggcagcaagatgtattactttggcataacggctttggatcgatttaaaagtcgtttg
aaggaataccaaacgtactgcgaacacgttagaacgatcccgcatttcagcgagttcccg
cctcacttagtggaatatatagaatatgggttacaaggacaggaaccaccgtcgagaccg
cagggctcgaaaactctagcggcaatgctggctccggttacgaccccgtacaaaaccatg
actacaactaccgtcacaactagcacgacgcaagcgaaaccgtctacgactccgactacg
tctctcacggctagagcctctatgccctcggtcgccaatgcgactaatatcgatacgttg
ctcgtggcaacagacaaggaggaaaaaattacgacaccgccggaagccttgcaggacaaa
actgctttcatcttcaataatctcagccagctgaatctgcaacagaaatgtgatgagatc
cgtgatattgttacggaagagtactggccgtggatggcacagtacttagtaatgaagcgt
gccagcatagagttgaactttcatgccttgtactcgaactttttggattgtataaaatta
cctgaagtgaataaaatggtcacgagagaaacattccgaaatatcaaggttctcttacga
agcgataagggaatagctaacttctctgaccgatcgctgttgaagaacttgggacactgg
ctcggaatgctaacactcggcaggaataagcctattttacagatagatatagatctaaaa
agcttactcgttgaagcatatcacaaagggcagcaagagctcctttatgtagtacctttt
gttgcgaaagtacttgagagttgtgcgaaaagtcgtgtcttccgaccacccaatccgtgg
accatggcaattatgaacgttctagccgaactacatcaagaacctgacttaaaactgaat
ttgaaattcgaaatagaagtactttgtaagaatctaagcatcgatgttggagagctaaag
ccggtcatttacttgaaagatcccgaaaaattgcgcaatctggaatatcagctgtcgcat
ccgaacaagaaagcggagacgactaacaatcaacagcaacctcaggggcctatagaggag
ttggttgggccgacaacaagcggcaccatcaatcctcaaactgcgccacccgtgaataca
acaccctcgttaccggctggcccacccgagccacgattcaattacatggatatatctgta
acaggcattgctaatatatctcaacacattactgccaacaatcaattacctctgttccaa
acgcatcctcatttgaaacaattcattcgcccggcggttgaaagagcaattcaggagtgg
atccatcctgttgtagataggtccattaaaattgctcttacaaccagcgagcaaattgtg
aggaaagattttgcgttggacccggaagatgtacgaatgcgtacagctgcgcgtcacatg
gtgcgcaatttaaccgctggtatggctatgatcacgtgtcgtgatcagatcctggcatca
attagcacgaatctgaaacaagcctttctcacggcgttaatcggtacgactccgcagcag
aaggaacttgtcgaacaagcggcgagtgtagtcgctgctgataacatggaactcgcgtgt
gcgttcgtacaaaagaccgctattgagaaagcaatacccgaaatggacaaacggctgttg
aatgaaattgagctgcgaaaaatcgcccggcaagaagggaaaagatactgcgatccgatt
gttaagtatcaggccgagaggatgccggagcagataaggctgaagatgggtgccgtaacg
cctcagcaaatggcagtatatgaggaattttcaagaaatattccaggattccttccgctc
tccgaacgagatacgcaagcgctctttataccgaaacctatttctgaggctcctatcacc
gcgttcacacccaattctgcggtggcagtcgctacggcgcaacaagtagcggcctacgca
actgtagcagttagcaacgacgaaatgggcgcaatgttggagaaacttgcgacggaagtc
gaggtcttattggctgccatggcacccgtggcaccgccaccgcagcacgctatccttcac
agtcttctggaatcgatcgtagtcacgagaagatcaagagacgccaatgcagctttggca
ttattaaagaaagctgtcgagggtttgctagacgggcccatgttcaacagcggcgtcatc
gataccgatagtctaatacaacgctacagagaagtgcacttacggatcttgaagtgtctt
caagatccgcgtgcatacggcatgcaatggacgaacaagaacgtgactcgttgtctgatc
gaatgccgggaggactaccggtataatttcgaagccgtggactacctcataagatctcac
ttgatcagtcttccccaatacgacttagctatagcgcaagctatagactcgggaaacgtg
ttggcaacggtgttcgccatgcagttggttcaactttatttgattgacgagaggcaggcg
actcatgtcaccgaaactgacttgtaccacacgattgagatattggctcgattgtcggtt
caccgatcactaccggaaggaatctcgggcttcagattgacaaatctggtcgaatcatta
cgtgccaatgttgattccggtgtgttgggagacagagctccagcaggacctacagcgcac
attcattctggaatcctgcaggtgagagctcgcgatttcgacgatccacccggactgatg
gacaagacggagtatctattacgtgaatgggtgcaaatgcaccataatccgcagtacgcg
cgagatcccacaaaagcgtttagcatattcgtccatcagatgaacatccacggcatcttg
aaaaccgacgacctcatcacgagattcttcaagctgagcacacaaatgtgcgtcgacctt
tgctatcggactctttcagaaactggcttagctccctcgattatacgtgcgaagtgcttc
cactcgttggatgcgttcgtacgtctcgtagcattattggtgaaacactcgggcgacgct
agtaatacccataccaagatcaatctcttgaataaggtgcttggtatcgtagccggtgtg
ctgctccaggaccacgaaatacgtggcgccgacttccaacaattgccgtaccatcggatc
tttatcatgctcttcttggagttgtgcgcgcccgaaccggttctagaggccgtgaatttt
caagttctaaccgccttttgccataccctacacattctgcggccagcgaaagcgtcgggc
ttctgttacgcctggctagagttggtctcgcaccgagtcttcatcggccgcatgctggct
atcacgccacagcagaagggctgggggatgtacgcgcagctccttatcgatctgttcaag
tacctcgcaccctatcttcgaaatgcggagttagcaaagcctgtgacgagtctatacaaa
gggacgctacgtgtgttgctcgtgctgctacacgactttccggagttcctttgcgattat
cattatggattttgcgatgtgataccaccgaattgcatacaaatgagaaatttgatttta
agtgcgttcccaagaaatatgcgcctacctgatccgttcacgccgaatctgaaggttgat
atgctgcaggagatatcgcacgctccgcgtgtccttaccaatttcgcgtctacgatacag
ccaaattccttcaggaaagagctcgactcttatctgaaggctcgcgcgccggtcaccttc
ctgtccgaactccgcagcaatttgcaggtgtcgcaagaggccggtgtgcgttacaacatt
cagctgatgaatgccctcgtgctctacgttggcacgcaggctatacaatttattcgcagc
aagggtcacacgcctaacatgtctaccatcgcgcactccgcgcacatggacatcttccag
aatttggccgtcgatctggataccgaaggccgttatttgttcctgaacgctatagcgaac
cagttgcggtatcctaacagtcacacgcattacttcagttgtacgattctctacctattc
gctgaagcgaacacagaagcgatacaggagcaaattacaagggttcttttggagagactg
attgtaaacaggccacatccatgggggcttctgattaccttcatcgaactcataaagaat
ccgacgtataaattctggtcgcacgagttcgtacattgcgcgccggagatcgaaaaattg
ttcgaatccgtagctcgatcgtgtatggtgcagaagcaaatacccacggcggagacggag
attccagagtga
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integrated database retrieval system
