Temnothorax longispinosus: 139817368
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Entry
139817368 CDS
T10889
Symbol
Dnalig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
tln Temnothorax longispinosus
Pathway
tln03030
DNA replication
tln03410
Base excision repair
tln03420
Nucleotide excision repair
tln03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
139817368 (Dnalig1)
03410 Base excision repair
139817368 (Dnalig1)
03420 Nucleotide excision repair
139817368 (Dnalig1)
03430 Mismatch repair
139817368 (Dnalig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tln03032
]
139817368 (Dnalig1)
03400 DNA repair and recombination proteins [BR:
tln03400
]
139817368 (Dnalig1)
Enzymes [BR:
tln01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
139817368 (Dnalig1)
6.5.1.6 DNA ligase (ATP or NAD+)
139817368 (Dnalig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
139817368 (Dnalig1)
DNA replication proteins [BR:
tln03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
139817368 (Dnalig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
139817368 (Dnalig1)
DNA repair and recombination proteins [BR:
tln03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
139817368 (Dnalig1)
NER (nucleotide excision repair)
Other NER factors
139817368 (Dnalig1)
MMR (mismatch excision repair)
Other MMR factors
139817368 (Dnalig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
139817368
NCBI-ProteinID:
XP_071641505
LinkDB
All DBs
Position
1:21660290..21666451
Genome browser
AA seq
983 aa
AA seq
DB search
MLKILATCSRLSSLALPARRLELAVAAHSRFVVVFNWIHTTNSHNSSDKQENQDAVENGK
RKRDSSNSSSSRWFCSSSPSKKQNIKLKKPKTITKTPSPGVKPRAKLGATPKNKLNKLSP
GSSKKTEKKQKGTPGGKKKKKEEDETVNGTVEEKTTNTVEEKTNNAQIGNGAAEGKRKTE
ESASSKKESESNTADKVKKTEKVKKKRARIIEPVDSSDDEDHLSLPESPKRSEVNDEEKK
IESEDKPSEINNVSNNDTDKSASDSEEKSETPKKSSTPEKSQTTTTKDESPKKEPTPEKK
AKKVHNFFMSKQKGDTKDDKASNRKSVCQSYNPSASAYHPIDDACWKRGDKTPYSAFART
LELIEETSGRLKTIEILSNYFRSVIVLSPADLLPSVYLCLNQLAPAYEGIEFGVADQNLM
KAVAQCTGRTLAQIKADVQEVGDLGIVAENSRSNQRTMFQPPPLTVSNVYSKLKEIAQMT
GPTSLTKKLDKIQTLFVACRNAEAKYFIRSLAGKLRIGLAEQSVLQALALACAMTPPEQD
YPPEILNASKKMSSDRFKEKYDEIALTLKTTYCECPNYNLIIPVLLEDGIKALPSKCKLT
PGIPLKPMLAHPTKGVQEVLTRFEGLKFTCEWKYDGERAQIHVADNGQVNIYSRNQENNT
TKYPDIIKRFKNTRGDQVKNCILDCEAVAWDREKKQILPFQILSTRKRKDANEEDIKVQV
CVFMFDLLYLNDEPLVKETFAKRRELLKEHFKEVEGEWKFANSLDTTTMEEVEVFLDESV
KGNCEGLMVKTLEKEATYEIAKRSRNWLKLKKDYLDGLGDTLDVVVIGGYIGKGKRTGTY
GGFLLACYDQENEEYQSICKIGTGFKEEELENYTKFFKDHVIPQVKSYYRFDSSHEPDHW
FEPIQVWEIKCADISLSPVHRAAIGIVDPEKGLSLRFPRFIRIREDKSCEQATSAQDVAD
MYNNQEQIKNKTSASKTAEEDFY
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgctaaaaatcctcgccacgtgctcacgcttgagctcgctggctctaccggctcgacgg
ctggagcttgcagtcgcagctcacagccgattcgttgtcgtttttaattggatacataca
accaacagtcacaactcgtcggacaagcaggagaatcaggatgcagtggagaatggcaaa
cggaagagggatagcagcaacagctccagcagtcgttggttttgcagttcttcaccttca
aagaagcagaacattaaacttaagaagccaaagacgattaccaagactccttcgccaggt
gtgaaacctcgtgcgaagctaggagctactccgaagaataagctgaataaactttcaccc
gggtcgtcgaaaaagacagaaaagaagcagaaaggtacgcctggtggaaagaagaaaaag
aaggaagaagatgaaactgtaaatggcactgtagaagaaaagaccactaacactgtagaa
gagaagaccaataacgctcaaataggaaatggtgcagctgaaggtaaaaggaaaactgaa
gaatctgcttcttcaaagaaggaatctgagtccaatacggcagataaggtaaagaagact
gaaaaggtgaagaagaaacgggccaggatcattgagccagtggattccagtgacgatgag
gatcatctatctttacctgaaagtccaaaaagatcggaggttaacgatgaagaaaagaaa
attgaaagcgaagacaagcctagcgagataaataacgtttcaaataacgacacagacaaa
agtgcctcggacagtgaagagaagagtgaaactccgaagaagtcctccacacctgagaag
tcacaaactactactactaaggatgaaagcccgaagaaggagcctacgcctgagaaaaag
gctaagaaagtgcacaacttttttatgtccaaacaaaagggcgacacaaaggatgacaaa
gcgagcaatagaaaaagcgtctgccagtcatacaatcctagcgcatctgcctatcatccg
atagacgatgcatgctggaaacgaggagacaaaactccatatagcgccttcgcacgcact
ttggagctcatcgaggagacgagcggaaggttaaagacaatagagatattgtcaaattat
ttccggtctgtcatagtcctgagccctgcggatcttctaccgagcgtttatctgtgcctt
aatcaattagcaccggcgtacgaaggaattgagtttggagtcgcagatcagaatctaatg
aaagccgtagcgcagtgtactggtagaacgctggcgcaaattaaagctgacgtccaggag
gttggcgatttgggaattgtcgcggaaaatagcagatctaatcagagaaccatgtttcaa
ccgccaccattgacagtttctaacgtatactccaaactgaaggaaatcgctcagatgacg
gggcccacgtctttgacgaaaaagttggataagattcagacgctgtttgtggcgtgtcgt
aatgcagaagcaaaatacttcattagatcgttggctgggaagcttcgtattggattagca
gaacaatctgttttgcaagcattggctttagcttgcgcgatgacaccgccggaacaagat
tatccacccgaaattctgaatgcaagcaaaaagatgtcgagcgatcgtttcaaagaaaag
tatgacgagatagcgcttacattgaaaacaacgtattgtgaatgtccgaattacaatctt
ataattcctgttctactggaggatggaattaaggctttaccgagcaagtgcaaactcact
cctggaatacctttgaaacccatgttggcgcatcctactaaaggtgttcaggaagtcctg
acgcgattcgaaggcctgaaatttacttgtgaatggaagtacgatggagaaagagcacag
atacacgtcgcggacaatggacaagtcaatatatacagtagaaatcaggaaaacaataca
accaagtatccagatatcattaagcgattcaaaaatactcgcggcgatcaagtaaagaat
tgcatactcgactgcgaggcggttgcttgggatagggagaagaaacaaatattaccgttc
caaatactcagtacaagaaagcgaaaggatgctaatgaggaggatatcaaagtacaagta
tgcgtgtttatgttcgatctgttgtacttaaatgatgagccgttggtgaaagaaacgttc
gcgaaacgtcgtgaactgctgaaggagcacttcaaggaagtggagggcgaatggaaattc
gccaatagcctggatactacgacgatggaagaagtggaagtcttcttggacgaatctgtg
aagggaaattgcgaagggctgatggtgaagacgttggaaaaggaagcaacctacgagatc
gcgaagcgatcaagaaactggttgaaactcaaaaaagattacttggatggcctcggcgac
acgcttgacgtggtcgtaatcggtggctacatcggcaagggaaagaggaccggcacttac
ggtggttttctcttagcttgttacgatcaggaaaacgaagagtatcaaagcatctgtaag
atcggcacaggattcaaagaggaggagctcgaaaattacaccaaattcttcaaagatcat
gtaataccgcaggtgaaatcgtactatcgtttcgatagtagccacgagccggatcactgg
ttcgagccaattcaagtctgggagatcaagtgtgccgacatcagcctcagtcccgtacac
agagcggctatcggaatagtcgatccggaaaagggactatctttaaggtttccgcgattt
atcaggattcgtgaggataagtcctgcgagcaggctacttccgctcaagatgtggcggac
atgtacaacaatcaagagcagattaaaaataaaacttcagcatcgaaaaccgcggaggaa
gatttctattaa
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