Temnothorax longispinosus: 139818974
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Entry
139818974 CDS
T10889
Symbol
Cpsf6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
tln Temnothorax longispinosus
Pathway
tln03015
mRNA surveillance pathway
tln03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
tln00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139818974 (Cpsf6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
139818974 (Cpsf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tln03019
]
139818974 (Cpsf6)
Messenger RNA biogenesis [BR:
tln03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
139818974 (Cpsf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
Motif
Other DBs
NCBI-GeneID:
139818974
NCBI-ProteinID:
XP_071644150
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Position
9:complement(5327066..5342817)
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AA seq
815 aa
AA seq
DB search
MADGDIDLYADDLEQDFAQDEFAGDGVDLYDDVIAAPAGGNGGVSSGNTGEGGGDTTSPN
EETNGNAPYHQLGNNIQPNQIGRRHQLYVGNLTWWTSDQDITDAVQSIGVSDFVEVKFFE
NRANGQSKGFCVISLGSEQSMRICMERLPKKELHGQNPVVTFPTKQALNQFESQCKTRPA
PAPQQSQSQRPHNPHQHQPPMPPHQQHPQHPQHPQHSQQNHGPRMMMGPPQVRPQRMPPP
GMGPPGPGGPGQQGPPRMHGPPLGPGPGPHHPLPGHPNQGPPPGYQQGPWNGPRPNGPPG
PPRGPSGGPPQQGPPGPGPGQHRPPGMSEIEPSSVFIQQFHGGPPGPPGQGPPRGPPGHP
GGPPGDPRGAQPRPEWNRPPGMHHGPQGPPGFPQHQHMQGPQPGQGPPQRGPPPGSMGGP
GGPPPGHGGPPQGPPQGPPGGPAPHVNPAFFPQGPPHQHPGQHPPGPPGPPHGPPHGPPH
GPPHGPPHGPPHGQSHGPPHVPPHGYGPPSAQAPYGAPGPDHRPEGPPPLTEQEFEEIMG
RNRTVSSSAIARAVSDAAAGEYASAIETLVTAISLIKQSKVAADDRCKILISSLQDTLRG
VETKSYGSGRRERSRSRDRERSHRRRRERSRSRDREYRERSRDRERDRDRERERDRDRDR
ERYYSEPYPRERSRSRERERERERDREYRERSREESTTRQSARPRVKEEPPETAPVSSSK
ATRSSIAGLVRKKSRRNVLSLGIMTIATENASEIENENRAGDHPSGNGNRNGNVNVNENG
IVGMNVETPRIAQDTKTKGKKEALKTMRARHVNMT
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtgacattgatttgtacgccgacgatctcgagcaagatttcgcgcaggac
gaatttgcgggtgatggcgttgatctttacgacgacgtgattgccgctccagcaggtggc
aatggcggcgtctcttccggaaataccggagagggtggtggcgataccacgtccccgaat
gaggaaactaatgggaacgcgccttatcaccaacttggcaataatatacagccgaatcaa
attggaagacgacatcagttatacgttggcaacttgacatggtggacaagtgaccaagat
ataaccgatgctgttcaaagcattggggtgtctgactttgtggaagtaaagttctttgag
aaccgtgccaatggccaatccaaaggtttctgtgtgatatccttgggctcagagcagagc
atgagaatatgcatggagaggctgcctaaaaaggagttgcatgggcaaaatcccgtagta
acttttcctactaaacaggctctcaatcaatttgagtcgcagtgtaagacgcgacctgct
ccggctccgcagcagagtcagagccaacgtcctcataacccacatcaacatcagccccca
atgccacctcatcaacagcatccccaacaccctcaacatccgcaacattcgcaacaaaat
cacggtcctagaatgatgatgggtcctccacaagtaaggccgcaaagaatgccgccaccc
ggaatgggtccaccagggcccggtggaccaggtcagcaaggtccgccacgtatgcatggt
ccgccgttaggaccaggcccaggaccgcatcatccgttgcctggtcatcctaatcaaggt
ccgccacctggctatcagcagggaccgtggaacggaccgcgtccaaatggtcctccggga
ccgcctcgaggacctagtggaggtccacctcaacaagggccacctggaccaggtcccggt
cagcatagaccccctggaatgagtgaaatagaaccttcatctgtcttcattcagcaattt
cacggtggtccacccggacctcctggtcaaggacctccacgtgggcctcctggacatcct
ggtggacctccaggggatcccagaggtgcgcagcctcgtcctgaatggaatagaccacca
ggaatgcatcatgggcctcagggaccaccaggtttccctcaacatcaacatatgcaaggg
ccgcagcctggccaaggcccaccacagagaggacctcctccaggttctatgggtggtcca
ggcgggccgcctccgggacacggtgggccaccacaaggtcctcctcagggaccaccgggt
ggccctgcaccccatgtcaatcccgcattctttccgcaaggaccacctcatcaacatccc
ggtcaacatccaccgggacctcctggtccgcctcatggcccaccacatgggccgcctcac
ggtcctcctcatggtccacctcatggcccacctcatggacaatcacacggaccgccacat
gtaccaccacacggttatggcccaccaagtgcacaagctccttatggagcacctgggcct
gatcatcgcccggaaggtccaccgccgctcactgagcaagaattcgaggaaataatgggc
cgtaatcgtacagtgtcgtcgtccgcaatcgcacgagcggtgtctgacgccgcggcaggc
gaatatgcaagtgccatagagaccttggtgactgctatctcgctgataaaacagtccaag
gtagccgcagacgacagatgcaagatcttgatcagttctcttcaagataccctacgcggt
gttgaaacgaagagctatgggtccggacgtagagagcgttcacgttcgcgtgacagagag
cgcagtcataggagacgacgcgagcggtccaggagtcgggaccgtgaatatcgtgaacgt
agcagagaccgcgagcgggatcgtgatcgcgagagagaacgggatcgtgatagagacagg
gaacgttattacagcgagccatatccgagagaacgttcccgcagcagagaaagagagcgt
gaacgtgaaagagatcgtgaatatagagagcgaagcagagaagaaagtacaacacgtcag
tcagccaggccaagagtaaaagaggaaccgccagagacggcgcccgtctcgtcttccaag
gcgactagatcctctattgctggacttgtaaggaagaaatcaaggagaaacgtattatct
ttaggtattatgacgatcgctacagagaacgcgagcgagatcgagaacgagaatcgagcc
ggagaccatccgagcgggaacgggaaccggaacgggaacgtgaacgtgaacgagaacggg
atcgtcgggatgaacgtggagactcctcgcatcgctcaagacactaaaacaaaaggaaag
aaagaagcactgaagacgatgcgagcaaggcatgtcaacatgacatag
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