Temnothorax longispinosus: 139819872
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Entry
139819872 CDS
T10889
Symbol
Msh6
Name
(RefSeq) probable DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
tln Temnothorax longispinosus
Pathway
tln03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
139819872 (Msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tln03400
]
139819872 (Msh6)
DNA repair and recombination proteins [BR:
tln03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
139819872 (Msh6)
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
ARM_CUL7_CUL9
Adenylsucc_synt
Motif
Other DBs
NCBI-GeneID:
139819872
NCBI-ProteinID:
XP_071645731
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Position
10:complement(7238940..7244973)
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AA seq
1122 aa
AA seq
DB search
MPKVNTILNYFTSPKTVKKPEAAKEVRAKSQTPKREQKNKGFVRNGKENKNTDDKKRTHK
EDTEEEEDEPIRPKKRRLIIPDVESGEDSGDEFKPDAESEESESVSEGDSENEPSTGTEE
ETPEKKRKTNFKSKPAQANRSRNTKTNKKDSKRPAQIQNQPVSNGLPATPTWPHLKFEFL
QPEKIRDINRKTPKDPDYDPKTIHVPTDFLNNQTPAMRQWWELKSKHFDCVFFYKIGKFY
ELYHMDAVIGVNELSLTYMRGEFAHSGFPEIGYGRYSASLIERGYKVARIEQTENPEMMA
ARCSKMARPTKFDKVVKREICQVSTRGTRVYTPLDVEASTPNSNYLLSLVEKCDLGSTIS
SFGVCFIDTTIGEFYLGQFVDDRCNSRLLTLLAHHPPVHVIYERGTLSQKTLQLINTLPA
ALKEPLQRESQFWSATTVLKKLHEGSYFKKENDSSFAWPEGLKPYLNEGDSLGLTPADNK
ELAIHALGGCVYLLKEFLLEQQLLAQGCFNTYTPPDFSAASSRAGLNYANTMVIDAVTIK
NLRLFGDGSLIGILDRCCTAFGKRLLREWICRPSCRKNVIIERQEAVQELVDRMDVMQSA
RAILSTLPDLERLLSKIHAQGNAARMKDHPDGRAIMFEGPTYSKRVIVDFTTTLAKFEEV
LKFIELFDDFKSSLITRYTRYEPDGEFPQLRETLDYFKTAFDHEEAKKQGYIVPKKGVDA
EYDSVLMELAENKKDLDRYLEKQKQHFGVKITFHGADRKRYQIEVPESQVKKVGPGYELT
SQRKGFKRYYTAEAKELLARQMNAEEHKDKVLKDLNRRIFAQFSEKYDMWHAAIHKLATM
DVLISLADYARNGDMCIPEIHDGSDGEVFIRIKDGKHPCITSDNFIPNDTSLATDDAASF
MILTGPNMGGKSTLMRQVGLITIIAQIGSYVPASSCCITLVDRIFTRLGANDDILAGQST
FLVELSETAAILQHATPYSLVLLDELGRGTSTYDGTAIAAAVVDALTKLKCRTLFSTHYH
SLVEDYKTNKEVTLAHMACMVETEEEEEVSQETVTFLYKLSEGACPKSYGFNAARLAGVP
SIITKRAHEIARRMEQETNHKHIFNALCKANGAGIRSLIATI
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaagtaaatacgatacttaattatttcacgtctccgaaaactgtcaagaagccg
gaagcggcgaaggaagtgcgagcgaagtcgcagactcctaagagggaacaaaagaacaaa
ggatttgtcagaaatggaaaagaaaataaaaataccgatgataagaagagaacgcataaa
gaggacactgaagaagaagaagacgaacctataaggcctaagaaacgacgtctcattatt
cccgatgttgagtctggtgaagattctggagatgaatttaagccagatgccgagtctgag
gaatctgaatcagtttccgaaggagatagtgagaatgaaccttcgacagggacggaggag
gaaacgccagagaaaaagaggaagaccaattttaaatccaagccagcacaagcaaatcgt
tctcgtaatacaaagactaacaagaaagattcgaaacgacctgcgcaaattcaaaatcaa
cctgtaagcaatggacttccagctacgcctacttggcctcatttgaaattcgagtttctg
caaccagaaaagataagggatataaacagaaaaacaccgaaggatccagattatgatccc
aaaacgatccacgtccccactgatttcttaaataatcaaactcctgcgatgaggcaatgg
tgggaattaaaaagtaagcactttgactgtgtatttttctacaaaattggcaaattctac
gagttgtatcacatggatgcggttatcggtgtcaatgagcttagtcttacgtacatgcga
ggtgaatttgcgcattccggattccctgaaattggatatggtcgttattcggcgagtcta
atagagagaggatacaaagtcgcacgaattgagcaaactgagaatccagaaatgatggcg
gcgcgttgcagcaaaatggctagaccgacaaaattcgataaagtcgtgaagcgcgaaatt
tgtcaagtcagtactaggggtacaagagtgtatactccgttagacgtggaagcgtctaca
ccaaactccaattatctgttatctctggttgaaaagtgtgatctcggttcaacgatcagt
tccttcggagtatgctttatagatacgacgataggtgaattttacctcggccagtttgtc
gatgatcgctgcaattcgagactattgactctgctggctcatcatccaccggttcacgta
atatatgaacgtggtaccttatcgcaaaaaactctgcagcttataaacactctaccagcg
gcgctaaaagaaccgctacaacgcgagtcacaattctggtctgctacaactgtactgaaa
aaacttcacgaaggcagttatttcaaaaaggaaaacgactcgagcttcgcatggcctgag
ggtctgaaaccctacttaaacgaaggagacagtttaggtttaacgccggcagataataaa
gaattggcaatacacgcactaggaggatgcgtgtatttgctgaaggagttcctactcgaa
cagcaattattagcgcaaggctgtttcaatacttacactccgccggacttttcggccgcg
agcagccgcgcaggtctcaattacgcaaacaccatggtaatagatgctgttacaataaaa
aatctaaggctcttcggagatggttcactcattggtatattagaccgttgctgtactgcg
ttcggtaaaagattgctgcgcgaatggatctgcaggccatcttgccgcaaaaacgttatt
atagagcgccaggaagctgtacaggaattagtggatcgaatggacgtgatgcagtcggct
cgcgcaattttgtcaactctaccagatcttgaaagacttttgagcaaaatacacgctcag
ggaaatgctgctagaatgaaagatcatcctgacggtagagccataatgtttgagggcccc
acatattcaaaaagggtgattgtagatttcaccacgacactcgctaaattcgaagaagtg
ctgaaattcatcgaactgtttgatgatttcaaaagtagcttgataactcgttatactcgg
tacgaaccggacggtgaattcccccaattaagggagacattagactattttaagaccgca
tttgatcacgaagaagctaaaaagcaaggctacattgttccgaaaaagggagtagatgct
gaatatgattcagttttaatggagctcgcggagaataagaaagatttagacagatatttg
gaaaaacaaaagcaacacttcggtgtaaaaataacattccacggagcagatagaaaacgt
tatcaaatcgaagttcccgaatcgcaagttaagaaagttggccccgggtacgaattaacg
tcgcaaagaaaaggcttcaaacgttattataccgccgaggcaaaggagcttttggcgaga
caaatgaatgcagaagagcacaaggataaggtgctgaaggatcttaaccggcgaatattt
gcgcagtttagcgaaaagtatgatatgtggcacgcagccattcacaaattagccaccatg
gatgtgctcatctctctcgcggattacgcgcgaaacggtgatatgtgtatcccggagata
cacgacggatcggatggtgaggtattcatcaggataaaagacggaaagcatccctgcatc
acgtctgacaattttataccgaatgatacttccttggcaaccgacgatgccgcctctttc
atgattctgacgggtccgaatatgggaggcaaatcgaccctcatgcgtcaagtgggtctg
atcacgatcatagcgcaaataggcagctacgttccagccagctcgtgctgcataaccctg
gtggaccgtattttcacgcgactgggcgcgaacgacgatattctggccggtcagagtacg
ttcttggtcgaactaagtgaaactgctgcgatactgcaacatgctacgccctattcactg
gttcttctcgacgagctgggacgcggcacatcaacctatgacggtacagcaatcgcggct
gcggtcgttgatgcattgaccaagctaaagtgtcgcacattgttctcaacgcattaccat
tctttggttgaggattacaaaaccaataaagaagtcacgttagctcatatggcatgcatg
gtggaaacagaggaggaggaggaagtgtcacaagagaccgtgacgtttttgtacaagctc
agtgaaggggcatgtccaaagtcttacggattcaatgccgctcgactagcaggcgtacct
tctataatcacaaaaagagcgcacgagatagctaggaggatggagcaggaaactaatcac
aagcacatctttaatgctctttgcaaagccaacggtgccggaataagaagtctcattgct
accatttaa
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