Temnothorax longispinosus: 139820121
Help
Entry
139820121 CDS
T10889
Symbol
Gnf1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
tln Temnothorax longispinosus
Pathway
tln03030
DNA replication
tln03410
Base excision repair
tln03420
Nucleotide excision repair
tln03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
139820121 (Gnf1)
03410 Base excision repair
139820121 (Gnf1)
03420 Nucleotide excision repair
139820121 (Gnf1)
03430 Mismatch repair
139820121 (Gnf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tln03032
]
139820121 (Gnf1)
03400 DNA repair and recombination proteins [BR:
tln03400
]
139820121 (Gnf1)
DNA replication proteins [BR:
tln03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
139820121 (Gnf1)
DNA repair and recombination proteins [BR:
tln03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
139820121 (Gnf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
Rad17
AAA_30
AAA_22
AAA_5
RuvB_N
AAA_14
BRCT_2
PTCB-BRCT
AAA_16
AAA_6
AAA_17
AAA_33
AAA_18
RNA_helicase
NTPase_1
AAA_assoc_2
nSTAND3
AAA_19
AAA_7
Viral_helicase1
Motif
Other DBs
NCBI-GeneID:
139820121
NCBI-ProteinID:
XP_071646226
LinkDB
All DBs
Position
10:complement(6903250..6908230)
Genome browser
AA seq
1001 aa
AA seq
DB search
MPRDIRSYFARVGSSQKNSEPVVSKPQKRRVISSDEDEEPKSSAKRTKVVRKTKKVSVLS
DSEDDTTIVEIVTKNSQSKSKKNESQKPCTEVSLSEVFGKKPITRVEETKVSRKLQKVES
EFHDDEDFEAVLKQLDTAEDIVMHDKKKDKNSAKNADTPKKSEAAVIKTDVDSKKSSKYD
ICLKEFNNKTSKLKSEEVKMSPGKSNEHSKVVTCSPPRQKEKKRNINGNLNISDKQLNNS
TSTSVSEEDQDTGKSQSRKKPKMDLFDERVEKKKQRAIMYEKYLQRGGARNPGSKEIPTG
AENCLAGVSFVITGVLDSLERNEAEDLIRKYGGRTVNTVSSKVTYIIVGDEAGPTKLTKA
NSLGIKQISEDDLLEMIRTRPEGKAKAIKPTKAKLNMKKIPNKSENDKSPSPSKIIALDS
PKKIKTPPLDSLEKIKTSPVSNQEVTTSVGSELLVEKYKPKTLKQIIGQQGDKSCAHNLY
VWLRDWHKNRQDPKYKDGTGKQTHGQSFKAALLSGPPGVGKTTTVQIVCKELGYDLVEFN
ASDTRNKTLLKEAVSGLLSNTTMKDYVIGTKQKITNKHVLLMDEVDGMAGNEDRGGLQEL
VSLIKCTEVPIICICNDRFNTKVKTISTHSYELKYQKLRVEQIRSSMKSLCFKENIKIST
EDLDRLIESTNYDIRQVINHLEFLGSQMSHVEKTDKKHSNKNVKLGIFDVTKIAFNAEQQ
KSMSLNDKIGLYFHDYNGAALFIQENYSGVRICQASPRQRLERIAHAADSISQGDLVDKV
IRGNMMWSLLPMHACFSFVIPANEMSGNLDGLIRFPSWFGRNSKATRFNRLMQELTTHTR
LATGANKDALNMDYLAHLRNAIVKPLIENGVDGIEAAINVMGKYHLTREDLDSVIEISAW
PGLRDPTTNLDSKVKAAFTRAYQKNPPMLPYAINSTATAKKRSTQDSNDFMEEEDDDEET
DNVDSDKMIKAKKPSTSKAATSTKKGGEPAKKRGRGRGKAK
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgggacatcagatcctactttgcgcgggtcgggagttcccagaaaaacagcgag
ccggtcgtctcgaagcctcagaagcggcgcgtcatttcatcagacgaggatgaagaacca
aagtcatctgcaaagcgcactaaggtcgtacgaaaaacaaagaaagtttccgttctgtct
gactctgaggatgacaccacgatcgtggaaatcgttacgaaaaattctcagtccaagagc
aagaaaaatgagagtcagaagccatgcacagaggtatctctcagtgaagtattcggcaag
aagccgataacaagagtagaagaaacaaaagttagccgaaaattgcaaaaagtggaatcc
gagtttcatgatgacgaagattttgaagctgtgcttaaacaattggacacggccgaagat
attgtgatgcacgataaaaagaaagataaaaacagtgctaaaaatgcagatacccctaag
aaatctgaagctgcagtaattaaaacagatgtggactccaaaaagagcagtaaatatgat
atctgtttgaaagaatttaataataaaacaagtaaactaaaatcagaggaggtgaaaatg
tctcccggtaaaagtaatgaacattcaaaagttgttacatgttctcctccgagacaaaaa
gagaagaaacgcaatattaacggaaacttgaatataagcgataagcaattgaataattca
acatctacctctgtatcggaagaagaccaagatacaggaaagtcacaaagtaggaagaaa
cccaaaatggatttatttgacgaaagggtagaaaagaagaaacagcgtgctataatgtac
gaaaaatatcttcagagaggcggcgccagaaatcccggttcaaaagagatccctacaggt
gccgagaattgcttagccggagtaagtttcgtgattactggtgttttggattcattagaa
aggaatgaagctgaggatttaatacggaagtatggtggtcggaccgtaaacactgtatcg
agtaaagtgacatatattatagtgggagatgaggctggcccaaccaaattgacgaaggcc
aatagtttaggcatcaaacaaatatctgaggatgatcttttagaaatgattcgcacgaga
ccggaaggtaaagctaaagctatcaaaccgacaaaggcaaagttaaacatgaaaaaaata
ccgaataaatctgagaacgataaatcgccatcaccgagtaaaataatagcattagattca
cctaaaaagataaaaacgccgccattagattcacttgaaaagataaaaacgtcaccggta
tcaaatcaagaggtaactacaagtgttgggtcagaactgttggttgaaaagtataaaccc
aaaactttgaagcagatcataggtcagcagggagataagagctgtgcacacaacttatac
gtatggttacgcgattggcataaaaatcgtcaggatcccaaatacaaagacggcactggc
aagcaaactcatggacaaagtttcaaagctgccttgctgtccggtccaccaggcgttggt
aaaacaacaactgtgcaaattgtttgtaaagaattgggatacgatctcgtggaattcaat
gcttctgatacgagaaacaagacacttctgaaagaagcagtctcaggattgttatctaat
accacgatgaaagattacgtcataggcaccaagcaaaaaatcacaaacaaacacgtactg
ttgatggacgaggtcgacggtatggctggcaacgaagatcgtggtggcttacaagaatta
gttagtttaatcaaatgcacggaagtgccaattatttgtatatgtaatgatcgatttaat
acgaaggtgaaaaccatttctacgcacagctacgaactgaaatatcagaagctcagagta
gaacagatcaggagttctatgaagtccctgtgttttaaagagaacatcaagatctcgacg
gaggatctcgatcgtttaattgagtcgacaaattatgacattcgacaagtaataaatcat
ttggaatttcttggcagtcaaatgtctcacgtggagaagactgacaagaaacattcgaat
aaaaacgtcaagctcggtatattcgacgtcacaaaaatagcattcaatgcagaacagcaa
aaaagtatgagtttgaacgataagatcggcttatatttccacgattacaatggtgcagcc
ctttttatacaagaaaattattcgggagtcagaatatgtcaagcgtcacctcgtcagagg
ctagaaagaatcgcccatgcggctgatagtatatctcagggagacctcgtcgataaagtg
ataagaggcaatatgatgtggagtctacttccgatgcatgcttgtttctcgtttgttata
ccggctaatgaaatgtcaggaaaccttgatgggttgatacgattcccgagctggttcgga
cgaaattcgaaggcaacgagatttaaccgattaatgcaagaattgacaacgcatacgcga
ttagccacaggtgcaaataaggatgccctgaatatggattatttagctcatcttcgaaac
gctattgtaaaacctctgatagaaaacggtgtggatggcatagaagcagcgataaatgtt
atgggaaagtatcatttaaccagggaagacttggattcagtaatagaaatctctgcttgg
ccaggacttcgcgatcctacgactaatcttgatagtaaagtaaaagcagcatttacacga
gcgtatcaaaagaatcctcctatgctgccatacgcaattaacagcactgctacagcgaag
aagagatctacgcaagattcaaacgatttcatggaagaagaagatgatgatgaagaaact
gacaatgttgattctgataagatgatcaaggcaaaaaaacctagtactagtaaagctgct
acatcgacgaaaaaaggcggcgaaccagctaagaaacgcggaaggggacgtggtaaagcc
aaataa
DBGET
integrated database retrieval system
