Temnothorax longispinosus: 139821720
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Entry
139821720 CDS
T10889
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
tln Temnothorax longispinosus
Pathway
tln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139821720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tln03019
]
139821720
Enzymes [BR:
tln01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
139821720
Messenger RNA biogenesis [BR:
tln03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
139821720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
Motif
Other DBs
NCBI-GeneID:
139821720
NCBI-ProteinID:
XP_071649087
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All DBs
Position
11:6393744..6401110
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AA seq
573 aa
AA seq
DB search
MEVTSSNFQDVLCELENVLKDATFLSIDGEFTGLNSGPDAGPFDTPAQYYGKLRAGSMDF
LLVQFGLSVFTYNSQTNKYSQRSYNFYVFPKPLNRHIPDSRFMCQASSIAFLANQDFDFN
KLFKHGIPYLSANEEEKLVKRLEEKQKLKEENNQDIIPIPDNDKPQIEEICSRIENFLAS
DAKELTIDRCNGFMRRLVYQEARVRWPNKVKVESKIENTWNCLLVQRVGTKEEEEERENE
KREKEKLEIKQAVGLSNLLKKIVESEKIIVGHNMLLDLCHIIHQFFTPLPSNYSDFKTLI
HGLFPSLLDTKVICQSQQFKELVSSSNLNILLDIVSKPPFSIPDIEPVEGRSYSISTEKS
HEAGYDAYITGLCFIALSNYLGTLQNSENATVLPNSPLLNPFLNKLPIARLKDFPYVNLV
GKDPNPSREHVFHITFPKEWKHADISQLFSPFGGGYVSWLSDTSAYIGLYRRDQASAVMA
NLSKGTVCKIQKYGQHQATLQADVSSEDRKRKLSSSENVDAKDDEKSTANGVKAPENDDE
WQVATGKRRKKRKEQAAAVVADKKAFEENDAWN
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgacgagctcgaattttcaggacgtgctgtgcgagttggagaacgtcttaaag
gacgctacttttctcagtattgacggcgagtttaccggccttaattcgggtccggatgca
ggccccttcgacacaccggctcagtattatggcaagctacgagcgggatcgatggacttt
ctgctcgtacagtttggtctgtccgtcttcacgtacaactcgcaaacgaacaaatattct
cagcgctcttataacttctacgtgtttcccaaaccgctgaatcgccatataccggacagc
aggtttatgtgccaggcgtcgtccatagcgttcctagcaaatcaagactttgacttcaac
aagctgttcaagcatggcataccgtatctcagtgccaacgaagaggaaaagcttgtcaaa
cgcctggaggaaaaacagaaactcaaagaggaaaacaatcaagatataattccaatacca
gataacgacaagcctcaaatagaagagatatgttctagaatagagaattttcttgcctca
gatgcaaaagagttgacgatagacagatgtaatggttttatgaggagactggtatatcaa
gaggcgcgagtcaggtggcctaataaagtgaaagttgaaagtaaaattgagaatacctgg
aactgtcttttggtccagagagtaggtaccaaggaggaagaggaagaaagggaaaatgag
aaacgtgaaaaggaaaaattggagattaaacaggccgtaggactcagcaacctgctgaaa
aagattgtagagtctgaaaagataatagtgggacataatatgctgttagatctgtgtcat
attatacatcaattttttacacctttgccaagtaactattcggatttcaagactttgatt
catggtttgtttcctagtttattggatacaaaagtcatctgtcaatcgcagcaatttaaa
gagcttgtgtcgtcgtcgaatttgaacatattattagacattgtgagcaagcctcctttt
tccattcccgatatcgagcctgttgagggacgcagttattcgatatcaacagaaaaatca
cacgaggcaggatatgacgcgtacatcactggattatgcttcattgcattgtccaattat
cttggcacattgcaaaactccgaaaatgctacggtgttaccgaattcaccgttgcttaat
ccttttcttaacaaacttcctatagcaagactgaaagattttccatacgtaaacttggta
ggaaaagatccaaatcctagcagagagcacgtatttcacataacattccccaaagaatgg
aaacacgcggatataagtcaactctttagcccatttggaggtggatatgtttcatggtta
tctgatacatccgcgtatataggcttatatcgtcgcgatcaggctagcgctgtgatggcg
aacttgtccaagggaactgtttgcaaaatacaaaaatatggccagcatcaagccaccttg
caggccgatgtctcttctgaggaccgcaaacgaaagttgtcatcatccgagaacgtggac
gcgaaggatgacgagaagtcgacggccaacggcgtgaaggcaccggagaatgacgacgag
tggcaagttgccacgggtaaaaggcgcaagaaacgcaaggagcaagcggcagccgtcgtg
gctgacaagaaggctttcgaggaaaacgatgcctggaattaa
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