Temnothorax longispinosus: 139822411
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Entry
139822411 CDS
T10889
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
tln Temnothorax longispinosus
Pathway
tln03020
RNA polymerase
tln03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tln00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
139822411
09124 Replication and repair
03420 Nucleotide excision repair
139822411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tln03021
]
139822411
03400 DNA repair and recombination proteins [BR:
tln03400
]
139822411
Enzymes [BR:
tln01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
139822411
Transcription machinery [BR:
tln03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
139822411
DNA repair and recombination proteins [BR:
tln03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
139822411
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
139822411
NCBI-ProteinID:
XP_071650185
LinkDB
All DBs
Position
11:7666669..7675851
Genome browser
AA seq
1906 aa
AA seq
DB search
MATSDSKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI
DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVNPHNPK
IKEIVMKTKGQPRKRLAFVYDLCKSKNICEGGDEMDINKENAENQPLMDRKPGHGGCGRY
QPNLRRSGLDVTAEWKHVNEDSQEKKIILSAERAWEILKHIKDEESFILGMDPKFARPDW
MIVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKSNNELLRNEQSGAAAHVISENI
KMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI
TPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQVLVRRGNSQYPGAKYIVRDNGERI
DLRFHPKSSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLS
CTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRK
MTKRDVFIEKEQMMNLLMFLPSWDGKMPQPCILKPKPLWTGKQLFSLIIPGNVNMIRTHS
THPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGR
FYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEP
TPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIAC
VGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGL
IDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLP
TIKVSNKAFEKKFKFDPTNERYLRCIFNEHIVRDTMGSGEGISELEREWEQLNRDRAVLR
EIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMRVIQGVKNLLEKCIIVAGDD
RLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMV
GALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAA
ARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKI
SPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDN
KFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETG
EFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVL
QFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHA
EVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKSGIEIPMAVGAGMMGTAGMFFGSVT
GMSSMSPQMTPWMGATPGYGASSMSPALSSGMTPGGACFSPSGASDASGLSPAYSAYSPQ
PGSPGSPGPSMSPFPMSPAGAASPSYSPTSPAYLPTSPSMTPSSPNYSPTSPTYSPTSPN
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNY
TPASPSYSPTSPSYSPSSPQYSPASPSYSPSSPKYSPTSPSYSPTSPSFAGTSPQYTPAS
PTYSPTSPTYSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPTSPTYSPTSPQYSPSSTKY
SPTSPTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAYETDE
NT seq
5721 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtccgactccaaggcacctttgaggacggtgaaacgcgtccaattcggcatc
ctctcgcccgacgagatacgtcgtatgtcagtcactgatggcggcatacgatttccggaa
acaatggaagggggccgccctaaactgggtggcctcatggacccgaggcaaggtgttatt
gacaggaattccaggtgtcaaacttgtgctgggaatatgacagaatgtcctggccatttt
ggtcatatagacctagcaaaaccagtattccatgtgggattcattacaaaaactataaag
atattgagatgcgtgtgtttttactgttccaaactgctcgtcaaccctcataatccaaag
attaaagaaatcgtcatgaagacgaaggggcagccgcggaagcgacttgcattcgtttat
gatttgtgcaaaagcaaaaatatctgtgaaggtggagatgaaatggatattaacaaagag
aacgcagagaaccagccactgatggacagaaaaccgggtcatggtggttgcggtagatat
caacctaatctcagacgatccggcttggacgtcactgcagagtggaagcacgtgaacgaa
gactcgcaagaaaagaagataattctctcagccgagagggcctgggaaatcttgaagcac
attaaagatgaagaatcttttatcttaggcatggacccgaaatttgctcgtccggattgg
atgatagtcacggtgttaccggtaccgccgctgtccgtcagacctgcggttattatgtac
ggttccgccaagaatcaagacgatctgacgcataaactggcggacatcattaaatcgaac
aacgagttactacgaaacgaacaatccggcgcggcggcacacgtgatctctgagaatata
aagatgctacagtttcacgtggcaacgctcgtcgacaacgacatgcccggcatgccccgg
gcgatgcagaagtcgggcaaaccactcaaagcgatcaaagctcggctgaagggaaaggag
ggtaggattcgtggaaacctgatgggtaaacgcgtggacttttcggcgcgcactgttatc
actccggatcccaacttgcgcattgatcaagtaggcgtgccgcgtagtatagcgcaaaat
ttgacattccccgaaatcgtgacgcccttcaacatcgacaagatgcaggtgctagtcagg
cgcggcaattcgcaatatcccggtgcgaaatatatagttcgcgacaatggcgagaggatt
gatctgcgtttccatcccaagtcctcggatctgcatctgcaatgtggttaccgagtggaa
cgacatatccgcgacggtgatcttgtgatcttcaatcgtcagcccactcttcacaaaatg
agtatgatgggccatcgcgttaaggtgcttccttggagcacattccgcatgaatctaagc
tgtacatcaccgtataacgcggatttcgacggtgacgaaatgaatctacacgttccgcag
tcaatggagacccgcgcggaggtagagaacattcacgtgaccccacgacagattatcacc
ccacaggcgaacaagccagttatgggaattgtacaggacactctaaccgctgtgaggaag
atgaccaagcgcgatgtgttcatcgagaaggagcaaatgatgaatttacttatgtttctg
cccagttgggacggcaagatgccgcaaccgtgtattctgaagccgaaaccactatggacc
ggaaagcagctgttctccctcatcatcccaggtaacgtgaacatgatacggacgcatagc
acgcatcccgatgaggaggacgatggtccatacaaatggatctcgccgggtgacaccaag
gtaatggtggaacacggggaactcgtgatgggtattctctgcaaaaaaactttaggtacc
tccgccggttctttgcttcacatctgtatgctcgagctgggtcacgaggtatgcggacgt
ttctacggcaacatccagaccgtcatcaacaattggctattattggagggtcattcgatt
ggtattggcgacactattgccgatccgcagacatatttggaaatccagaaggcgatcaag
aaggccaaagaagacgtgatagaggtgatccaaaaggcacacaacatggaactcgaacct
acgcctggcaacacgcttcgtcagactttcgagaatcaggtgaacaggatcctgaatgac
gctcgagacaagaccggaggctccgccaagaagtccttgacagaatacaataatttaaag
gccatggtggtgtcgggctcaaagggctccaacatcaacatttctcaagtcatcgcctgt
gtaggtcagcaaaacgtcgagggtaaacgaatacctttcggcttccgtaagagaacgctg
ccgcatttcatcaaggacgactatgggccagagtcccgcggctttgttgagaattcgtat
ctagccggtcttactccatctgagttctatttccatgcaatgggcggacgtgagggtctt
atcgataccgccgtaaaaacagctgagaccggttacattcagcgtcgtttgataaaggct
atggagtcggtcatggtgcattacgatggcaccgtgcgtaattccgtcggtcagctgatt
cagctacgttacggagaggacggtctctgcggtgagaccgtcgagttccagaatctacca
acgatcaaggtgagcaacaaagccttcgagaagaagttcaagtttgatccgaccaacgag
cgatatctacggtgtatattcaatgaacacatcgtccgagacacgatgggttccggagag
ggaatatccgagctggaaagagagtgggaacaattgaacagagatcgcgctgtacttcga
gagatctttccaagcggcgaatcaaaggttgtactgccctgcaatctgcaaaggatgatt
tggaacgtacagaagatattccacatcaataagcgagcgccgaccgatctcagtcctatg
agggtgattcaaggagtaaaaaatcttttggaaaagtgtatcattgtcgccggggacgat
agactgagcaaacaggcgaacgagaacgcgacattattgttccagtgtttagtaaggtcg
accttatgtaccaagtgcgtctccgaggagttcaggctgtcgagtgaagccttcgagtgg
ctaattggagaaatcgagacgagattccagcaagctcaggtgtcacccggtgagatggtc
ggcgcattggcggcgcaatctctcggcgagcctgccactcagatgaccctgaacaccttc
cactttgccggtgtatcatcgaagaacgtgaccctcggtgtgcccagattgaaggaaatt
attaacatcagcaagaaaccgaaagcgccgtcactcacagtgttcttgacgggcgcggcc
gcgcgtgatgctgaaaaggcaaaaaacgttctctgccggctggagcacacgacgttgaaa
aaggtgacggcgaacacggcgatatactacgatcctgatccgcagaacactgtaatcgcg
gaggaccaggagtttgtcaacgtttactacgagatgcccgactttgaccccacgaaaata
tcgccgtggttgttgcgaattgaactggatagaaagcggatgactgacaagaagctgacg
atggagcagatcgcagagaagatcaatgccggctttggcgacgatctgaactgcatattc
aatgatgacaatgccgagaagttggtgctacgtattagaataatgaacagcgacgataac
aagttccaggacacggatgaggagactgtagataagatggaagacgatatgttccttcgg
tgtatcgaagccaacatgctcagcgacatgactctgcagggtattgaagctatcggcaaa
gtttacatgcatctgccgcaaacggattccaagaaacgcatcgttatcacggaaaccggc
gaattcaaggccattgcggaatggcttttggaaaccgacgggacgagcttgatgaaggtg
ttgagcgagagagacgtggatccggtgcgaacgttcagtaatgatatttgcgagatattc
caagtgctcggcatcgaagccgtgcgaaagtcggtagagaaggagatgaacgcagtgttg
cagttctatggtctttacgtgaactaccgacatctcgctttactttgcgacgtcatgaca
gcgaaaggtcatctcatggcgataacacgtcacggaatcaatagacaagataccggcgct
ttgatgaggtgttccttcgaagaaacggttgatgtactactggatgccgcatctcacgca
gaggtagatccaatgagaggggtatccgagaatattataatgggacaacttcctcggatt
ggaacaggatgctttgatctattattggatgctgagaaatgtaaatctggtatcgagatt
cctatggcagttggcgcaggaatgatgggaacggcgggaatgttctttggcagcgtaact
ggcatgtccagcatgagtcctcagatgactccttggatgggagctactcctggttatggt
gcatcaagtatgtcgccagcattgagcagcggtatgacgccaggtggtgcatgcttttca
ccgtcgggagcatcagatgcatcgggcttgtcgccagcatactcggcttattcaccgcaa
ccgggaagtcccggtagtccgggtccgagtatgagtccattcccgatgtcaccagctggt
gcagcgtcacctagttactctccgacatcaccggcgtatctgcccacatcgcctagcatg
acaccctcgagtccaaattattcgcccacaagtcctacgtattcgccaaccagcccgaat
tattcaccgacatcaccaagctattcgccgacaagtccgagctattcgcccacttcgccg
agttattcgccgacaagtccaagttactcgcccacttctccgagttattcaccgacgagt
ccaagttactcgcctacctcaccgagctattcgccaactagcccgagctattcgcccaca
tcgccgagctactcgccaacttcgccgagttattcaccgacaagtccgagttactcgcca
acctcgccgagttattccccgaccagtccaagttactcgcccacaagtccaagctattca
cccacgagcccgagttactcaccaacttcaccaagctattcaccaagctcgcctaactac
acacctgcttcaccctcatattcgccgacttcgcccagttattcgccaagctcgccgcaa
tattcgcctgcgagtccaagctactctcccagcagtcccaaatattcaccgacgagccca
agttattctcctacctcgccatcattcgccggtacatcgccgcaatacacgcctgcaagt
cccacgtactcgccgaccagcccgacatattcgcctacaagtccatcgtactcgccgagt
tcgccgcagcacactgcatctggcagcacccgatattcacccagcagtccgaattattca
cctaccagcccgacgtactcgcccacaagtccgcagtactcgccgtcaagcaccaaatat
tcgcccacgagtcccacgtacacacccacaagcccgagttattctccgacgagtccaacg
tactcgccgcccgtaccgggatactcgcccacgagtcccacgtactcaccagcgtcaccc
gcttacgagacagacgagtaa
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integrated database retrieval system
