Temnothorax longispinosus: 139822464
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Entry
139822464 CDS
T10889
Symbol
Sima
Name
(RefSeq) uncharacterized protein Sima isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
tln Temnothorax longispinosus
Pathway
tln04137
Mitophagy - animal
tln04140
Autophagy - animal
tln04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tln00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
139822464 (Sima)
04137 Mitophagy - animal
139822464 (Sima)
04148 Efferocytosis
139822464 (Sima)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tln03000
]
139822464 (Sima)
Transcription factors [BR:
tln03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
139822464 (Sima)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS
PAS_3
PAS_11
PAS_9
PAS_4
HLH
OS-D
PAS_2
Motif
Other DBs
NCBI-GeneID:
139822464
NCBI-ProteinID:
XP_071650286
LinkDB
All DBs
Position
11:complement(7397891..7451210)
Genome browser
AA seq
1512 aa
AA seq
DB search
MNARLHEMEEERRGGKAREEDGNIILGDGRQQRGRCSDLRDWIGKASGYVGVDARHMARG
NGIDFPSRELLKPPPSSYGPAIAFSNVNVLPGNIAAPSSSLTSHAGDNTRSRACDIGTTS
CSTMRFPYASGLSCNVACSNAPATSCNIASATCNVASAGADCDDPVETRWFRNDGHLADP
QSGTRAANTAASRTCQLGPIDVEDLAMYFDPPTDGCKPPSAGNRTIYSRRSRYAQAARMD
QPREYRRDLDFRDLPSCDLAPNHLRTCDMGPSTLGYCDLGYSDLRLRDSPFCDPRLSDSQ
FCDVNSHAAHPCEEQPRESGQYDLGQGGPGPGNWFCNNCPELFNFCSEDRWLQCPASDRC
PLYDTSYAYGTPVLPPCMYDNGYDDNDNLHHGYVEDEQLLENYLSNEKRKERSRDAARCR
RSRETDIFTELAAALPVAPEQAALLDKASVMRLAIAFLKVRAIVDSIPVSLAKSELSAKT
DKLFPKALNGFMLVLSSDGNMVYLSENVRDYLGVSQMDMMGQSVYEYSHPCDHDELRECL
SSKSTDTDEKRGRNFFLRLKCTLTNKGRKVNLKSASYKVIHCTGRLTNIRDSNSNSMEVD
SEERQKEDEDAVQDTGVSLVLVGSPIPHPSNIEIPLGRYTFLSKHSLSMKFTYADEKLAE
YFGWNSEELMGQSVFDFYHILDNLRLNKCFKCLFSKGQCETEAYRFLSKQGGYAWVVTQA
TLIHCSKQQKPISVVCVNYILSGIEHEDEVYSARQLAVHDSGADLVKIEKPLPVLVPSGG
GAVSTTDSSQVSLNDEEETLAEESAIDDESRSDDRPFAVTASIFRSANGKTGCKDVSQKD
GALPKHVQEQKAFVQALKESLEESIKESLKENDEPAAADCRQSLTKKTSFIFQDKPTVVR
DSSDSAGHRDRPQSVTRHLFAPLVQQQEQQQQQQEQPQLFCRPQTATASIFAPRTEDMNK
GFLYFSEDHPGVTMLKDEPDDLTHLAPTAGDVCVPLEDTPFLSDMLDEIFSNDHYSCPLL
SPGDPLTPELRSADLSGSLKDADLVDATSRTKDAVDRLADSDPFMYGDSPGSPCGIDPSA
VLPSLSKYRQSPERSMDSLGSPTGGSGGDGLSEDEMLMLGISDSIGDEELALRAPYIPMS
DQDEALELLMNDDMVMWSSSQSADKGSSKWLLDDREQRNSESSLAQLLRTDQAVSRRYND
HGGGLLNPTHLLGQTPRKNTIFESDRWSSNQERPNKRIHSGFNMDSESEYKRLKCDDSSF
ERINLEDTLLTKQQRLSTTLHKKSLPSLGNTCGSQLLRRLVSSQIPSIASQATTLSDIDG
DIRGDGERRRGDILKQRARVLDDLIDLVETEGNRGGGGGGGENRSSIGDGLDKIDTTSRR
RNPSCGTGGSSVLMNLLVSGCDDPLINSRNVPTLLPRNLTTPLSVNVDNQMVPHCGNADV
ISLPDHLSPDTRKHLIGPFTGGGGDGSTTPIVSPTTSAMVSFDGFDYDASAGLLEVGPDV
LGNLLLGDRNLV
NT seq
4539 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcgcgtctgcacgagatggaagaagaaagacgaggaggtaaggcgagagaagag
gatggaaacatcattctcggtgatggtcgtcaacaacggggtcgttgctccgatctccgc
gactggatcggcaaggcgtcgggttacgtcggtgtcgatgcgcgtcacatggcaagagga
aacgggatcgattttccgtcgcgcgaattgctgaaaccaccgccgtcgtcttatggtcca
gcgatcgcgtttagcaacgtcaatgtcttacccggcaatattgccgcaccctcttccagc
cttacgtcacacgctggcgataatactagatcacgagcttgcgatatcgggacgacatct
tgctccacgatgagatttccgtatgcgtctgggctgagttgcaacgtggcgtgtagtaat
gcaccagcgacgtcgtgcaatatcgcgtcagcaacgtgcaatgtcgcttcagcgggcgcc
gattgcgacgatccggtggaaacaaggtggttccgtaacgacggtcacttggccgacccg
cagtcggggactcgcgcggcgaatacggcggcctcgaggacttgccagcttggtccgatt
gacgttgaggacctcgcgatgtactttgatccaccgacggacggctgcaaaccgccttcg
gcgggtaatcgcacgatctactcgaggagatcgcgatacgcgcaggccgcaaggatggac
caaccccgagagtatcgtcgcgatctggatttccgtgatctaccctcttgcgatttagcg
cctaaccatttacgaacttgcgacatgggtcccagcactctgggatattgcgatctaggg
tatagcgatttacgactacgtgactcgccattttgcgatccgagacttagcgactcgcaa
ttttgcgacgtgaactctcatgccgcacacccgtgtgaggagcagccgcgcgaatcgggc
caatacgatctgggacagggcggtccaggaccaggcaattggttttgcaacaactgcccg
gaactgttcaatttctgcagcgaggaccggtggctacagtgcccggcgagcgatcgctgt
cccctttacgacacctcgtacgcttatggcacacccgtcttgccgccatgtatgtacgat
aatggttacgatgataatgataacttgcatcacggctacgtggaggacgaacagctcctc
gagaattacttgagcaatgagaagaggaaagagaggtcccgcgatgcagcgcgctgcaga
cgcagtagggagaccgatatcttcaccgaactcgcggccgcgcttccggtcgcgccggaa
caggcagcgcttttagataaggccagcgtaatgagactggcaattgctttcctcaaagtc
cgggccattgtggattctattccagtttcgctggccaaatccgagttgtccgcaaagacg
gataaactatttccaaaagctctcaatggctttatgttagtactctccagtgacggcaat
atggtctacctgtcagagaacgtcagagattatctcggagtgtcacaaatggacatgatg
ggacaaagtgtatacgaatacagtcatccctgtgaccatgatgaattgcgcgagtgcctg
tcttcgaagtcgacggataccgatgagaaacgtggccgcaacttcttcttgcggctcaaa
tgcaccctcaccaacaaaggcaggaaggttaatctgaagagtgcttcttacaaggtgatt
cattgcactggcagactgacaaacattcgcgactcaaactcgaattccatggaagttgat
agtgaagaacgacaaaaagaggatgaggacgcggtacaagacacgggtgtttctctggtg
ctcgtgggtagccctataccccatcccagtaacatcgagatacctttaggacgctatacc
tttttgtcgaagcacagtctcagtatgaagttcacctatgccgacgagaaattggccgaa
tactttggctggaacagcgaggaactgatgggtcaatcagtcttcgatttttatcacata
ctcgacaatctgcggctaaataagtgcttcaaatgcctgttcagcaagggccagtgcgag
accgaggcgtacagatttctcagcaagcaaggcggctatgcctgggtcgttacccaggcc
actctgatccactgctctaaacagcagaagccgatctccgtcgtctgcgtcaattacatc
ctaagtgggatcgagcacgaggatgaagtgtacagcgcgcgccaactggccgtgcatgac
agcggtgccgatttggtgaagatagagaaaccattgccggttttggtgccgagcggtggt
ggtgccgtgtcgacgacggactcgagccaggtatcgctgaacgacgaggaggagactctc
gcggaggaatcggccatcgacgacgaatccaggagcgacgatcgcccgttcgccgtcacc
gcgtcgatctttcgctcggccaacggaaaaaccggctgcaaagacgtttcgcaaaaggac
ggcgctttgccgaaacacgtccaggaacaaaaggcgttcgtgcaagctcttaaggagtcc
ctggaggagtcgattaaggaatcgctcaaggagaacgacgagccggcagcggcggactgc
cgacagtccctcactaagaagacgtccttcatcttccaggataaaccgacggtggtgcgc
gattcctcggacagtgctggacaccgtgatcgtccgcagtcggttacgaggcatctgttt
gcaccgctcgtgcagcaacaggaacagcagcagcaacaacaggaacagccgcaattattc
tgccgaccgcaaacggccacagcgagcattttcgcgcctcgcaccgaggacatgaacaag
ggcttcttgtatttcagcgaggatcatccgggtgtcaccatgttgaaggacgagccggat
gacctgacacatctcgcacccacggctggcgacgtgtgcgtacccttggaagatactccc
ttcctgtcagacatgctggacgaaattttcagtaacgatcactacagctgtcctctgctg
agtccgggcgaccctctgacaccggagctgcgttccgcggatctctcaggatcccttaag
gacgcagatctggtggacgctactagcaggaccaaggacgcggttgatcgtctggccgat
agcgatcccttcatgtacggcgactcgcccggaagtccctgcggcatcgacccgagcgcc
gtgttgccgtccctctcgaagtatcggcagagtcctgagcgcagcatggactcattaggt
agtcctacaggaggtagtggcggcgatgggctttccgaggacgagatgcttatgttaggt
atcagcgacagcataggcgatgaagagttggcactcagagccccctatattccaatgtca
gatcaggacgaagcgttagagctgctcatgaacgatgacatggtcatgtggagctcgtca
caatctgccgacaaaggatcttcgaaatggctactcgacgatcgagagcaacgtaattct
gaatccagtctggcacaattgctacgaaccgaccaagcggtatcgcggcgatacaacgat
cacggcggaggtttgctaaatccgacgcacttactggggcaaacacccagaaaaaacaca
atcttcgagtccgatcgatggtcctctaatcaggaacgcccgaataaacgcattcactcc
ggatttaatatggactccgaaagcgagtacaaacgtcttaagtgcgacgactcgtctttt
gagcgtataaatctcgaagatactttattaacgaagcaacagcggctatcgacaacgctt
cacaagaagtcactaccgagtctcggtaatacctgtggtagccagcttttgcgtcgcctc
gtctcgtctcaaataccgagcatcgcatcgcaggcgacaactttatccgacattgatggc
gatattcgcggtgacggcgaacgtcgccgcggggacattttgaagcagcgcgctcgcgtc
ctcgacgatctcatcgacctcgttgagacagagggtaatcgcggcggaggaggaggcgga
ggcgaaaatcgcagcagcatcggcgatggcctagacaagatcgacacaacaagccggagg
aggaatccttcctgcggcactggtggcagcagtgtgctaatgaatctcctggtttccggc
tgcgacgatcctctgatcaattcccgcaacgtaccaactctgttaccaaggaacttgacg
accccgttgtccgtcaacgtggacaatcagatggtaccgcattgcgggaacgcggacgtc
atatccttgcccgaccacctcagtccggacaccaggaaacacttgatcgggcccttcacc
ggcggcggcggagacgggagtacaactcccatagtctcacccacgacgtccgcgatggtg
tcttttgatggcttcgactacgacgcatccgcgggcttgctcgaagtgggaccagatgta
ctcgggaatctactgctcggggatcgaaatctggtgtga
DBGET
integrated database retrieval system
