Temnothorax longispinosus: 139825301
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Entry
139825301 CDS
T10889
Name
(RefSeq) uncharacterized protein
KO
K18716
nucleoporin NUP42
Organism
tln Temnothorax longispinosus
Brite
KEGG Orthology (KO) [BR:
tln00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tln03019
]
139825301
Messenger RNA biogenesis [BR:
tln03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
139825301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH_4
zf_CCCH_4
zf-CCCH
Nucleoporin_FG
Torus
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
139825301
NCBI-ProteinID:
XP_071654029
LinkDB
All DBs
Position
2:1276385..1279851
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AA seq
638 aa
AA seq
DB search
MVICKFYRQGNCRYGQYCQYEHINHFGNTKNEDDIIILVAKEVLLAERGGQWLLSCFAPL
KERPCIPDMEDLSPEEVRWEIYHAQKNGMVEQAKLHYQQLCQDMKAKREMLKNPSRETIS
VLKKLLGSGQKAPHLNLVNNTPTNNVFGNTSFGVQNNNPFGGGGFTSSSNASSIFGKSNS
NNNTTSVFGGATNFGNNIGGFGTATSGAGSIFGTPSTSTSFSGVQNSAPTFGTPQNNPVF
GGTSQNVFGQNSNVFGGTAQLGNAPTTSLFNNPTSQANTSLFGGATTTAPSLFGGSAAGL
QTNSVFGVSTSSSSGSFNGGVFTQPKSQVPAFGGAPVFAGVTPNYANNPAGNAMFGGGQT
FGAPAISTSGIFGGSTVTVTPGFGAAAAITTPAFGTSIVSTTPGFGGSVATTAPAFDLNQ
QPSNNTTFGTTVSAPNVFGPQNTDPTMPVGTMSFGAPAVAITGPFVTTSSQQFDSTSVSS
APFAGTGFGVAVPSTNSTFGTTETASNSIFANAGTTFATSNGTVPNPSLFPAPTFGSVNT
SSPFGPNAGTTLTSTAANPFAPRMQQGGSPFGIAQNQSNINASPFGKSPFNTTATSTVID
DTIYSVDSALTDDEKNMFLAEKFIIGKIPLKPPTKDIR
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggttatctgcaaattttatcggcaaggcaattgtcgttacggacaatattgccagtac
gagcacataaatcatttcggcaacaccaagaacgaggatgatatcattatcttggtggcc
aaggaggtgcttcttgccgagcgaggcggacagtggttgttgtcgtgctttgcgccgctc
aaagaacgtccctgtatcccggatatggaggacttgtccccagaggaagtccgatgggag
atatatcacgcacagaagaacggcatggtcgaacaggcgaaactacactatcaacaattg
tgccaagacatgaaggcgaaaagagagatgctgaaaaatccttcgcgagagacaatctca
gtgctgaaaaaacttttgggaagtggccaaaaagctcctcatctgaacctagtcaataac
acgccgaccaataacgtatttggaaacacatcattcggcgtgcaaaataataatccattt
ggcggaggtggatttacctcgtcgagtaacgcatcgtcgatattcggaaagtctaatagc
aataataatacaacgtccgtatttggcggtgcgacgaacttcggaaacaatatcggcgga
tttggtactgcgacgagcggtgctggctctattttcggaacaccgagcacctcgacatcc
ttcagcggcgtacagaacagcgcgccgacgtttggaacgcctcaaaacaatccagtcttc
ggcgggacgtctcaaaatgtgttcggtcaaaacagcaatgtattcggcgggacggcccag
ctcggcaacgcgcccaccacctcgctgttcaacaatccgacgtcgcaggcgaacacttcg
ctgttcggtggggcgacgaccaccgcccccagcttgttcggcggctccgccgctggatta
cagacaaactcggtcttcggcgtctccacctcgtcatcgtccggctctttcaacggcggg
gtattcactcagccgaaatcgcaggtgcctgcgttcggcggagcgcccgttttcgcaggg
gtaactcctaactatgccaacaatcccgctggcaacgcgatgttcggcggcggtcaaaca
ttcggcgctcccgcgatatccacgagcggtatcttcggcggatccacggtcaccgttacg
ccgggttttggcgcggcagccgccatcacaacgccggctttcggtacgtccattgtatcc
acgacgccaggtttcggtggatccgtcgctaccacggcgccggcttttgatctgaatcaa
cagcccagcaataataccaccttcgggacgacggtatccgctccgaatgtctttggtcca
caaaacaccgaccccaccatgccggtaggcactatgtcgttcggcgcgccagctgtcgcg
atcaccggcccgttcgtcaccactagctcgcagcaattcgattctacaagcgtgagctcg
gcgccgtttgccggcacgggattcggcgtggccgttccgagtacaaatagcacgtttggc
accacagagacagcttccaattcgatattcgcaaacgcaggaactacctttgcaacctcc
aacggaaccgttccaaacccgtcgctgttccccgcaccgacattcggcagtgtcaacact
tcctctccgttcggtccgaacgctggcacaactcttacgtcaacggccgcaaacccattt
gcaccgcggatgcaacaaggcggttcaccgtttggaatcgcgcaaaatcagtctaacatc
aacgcttctccatttggaaaatcaccgttcaacaccactgcaaccagcaccgtcatcgat
gataccatttacagtgtggatagtgcattaacggacgatgaaaagaatatgttcttggct
gaaaaatttattatcggcaaaataccactcaagcctcctactaaagatataagatga
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