Thiothrix litoralis: J9253_02585
Help
Entry
J9253_02585 CDS
T07754
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tlo
Thiothrix litoralis
Pathway
tlo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J9253_02585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tlo03019
]
J9253_02585
03009 Ribosome biogenesis [BR:
tlo03009
]
J9253_02585
Enzymes [BR:
tlo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
J9253_02585
Messenger RNA biogenesis [BR:
tlo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J9253_02585
Ribosome biogenesis [BR:
tlo03009
]
Prokaryotic type
rRNA processing factors
J9253_02585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
QTR46854
LinkDB
All DBs
Position
complement(530834..534139)
Genome browser
AA seq
1101 aa
AA seq
DB search
MKRILINATQPEEIRVAMVDGQRLYDLDIEHSLRAQKKANIYKGVITRVEPSLEAVFVNY
GAQRHGFLSFREVAPEFYHPNAKYTGRPAVKDVMREGMEILVQVDKEERGNKGAALTTYL
SLAGRYLVLMPNNPKAGGVSRRIEGDDRQQIKQTLSELDIPDSMGVIVRTAGIERDAEEL
SWDLDYLKTLWNAIQQAYSQHKGPTLLYQESNVIIRALRDYFRRDIGEIVIDNEKVFQQA
RDFMQAVMPHNIRKLKAYTDGTPLFSRFQVENQIETAYQRTVALPSGGAIVIDHTEALVS
IDINSARATKGHDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMLPSKHQREVEK
RLRDAMKLDRARVQVGRISRFGLLEMSRQRLRPSLGESSQIVCPRCTGHGHIRSTDSMAL
SILRLVEEEAMKEMTGKVIARLPVAVATFLLNEKRQAITDIQARRNVELTIIPNPYMETP
HYDISRIRNDNLEDDEAQSSYLYIPAPPNIEETIQQDANHAPVPVEAAVTNVMPSTPAPQ
HQRHQRADEEVLTAPPIPAAAPVKGPGLMRRIFGSLFGSSPTVDKAAEEAENKAEAATPQ
PQPRGDRRNDQRNNRNRNNGRNDAVSDAEHPATDESRNRNAQDNRQRQNRNGERNNDQRD
NDQSSNNERRNNRNRNERDNTSEQNRRPPREQRPPRTQEPDTASAQGHDQTPVEITLSAP
RDTRDNNRDNGQQPQSRRDRSRRDPRNRQRPEETNSDTTPANNSVPQDAAPQERQRNPRQ
QRPRGNETTPVNEIDDNNLPPDQQQADTQPPNRNRRNQVAAPSLPETDANDFDDDAMDDA
DADVESGDNTTATSSDIQPRGPRERRGRTRRPRGSQNRQQRPPRPASAELEPLPAENLEP
LIIDLSAAQPAQQPRYERQPPKTEGRPVPVVIQVSPPETPPEPQERKPKAPVQPEPKPKA
EATPEVQVQPEPKPKAEATPEVQVQPEPKPKAEATPEVQVQPEPKPKAKAKLEVQAQPEA
APIAKPVPAPKPEPAPPADAVAEIVADKPVAPPEVVADKPATPPEPVAEPKIPETVSATE
PKPAAPAPMKRRPSWMHTEPE
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtattctaattaatgcgacccaaccggaagaaatccgcgttgccatggttgac
gggcaacgcctttatgacctcgacattgaacattccctgcgtgcccagaaaaaagctaat
atttacaaaggtgtcatcactcgcgtcgaacccagcttagaggcagtcttcgtcaactat
ggcgcacaacgtcatggttttttgtcgttccgcgaagtcgcgcctgagttttaccacccg
aatgccaagtacaccgggcgtcccgccgtcaaggatgtgatgcgtgaaggcatggaaatc
ctcgtgcaagtcgataaggaagaacgtggcaacaagggcgcagccctgaccacttacctc
agccttgccgggcgttatctggtactgatgcctaacaacccgaaagcaggtggcgtttcg
cgtcgcatcgaaggtgatgaccgccaacaaatcaagcaaaccctcagtgagctagacatt
cccgacagcatgggcgtgatcgtgcgtaccgctggtattgaacgtgatgctgaggaactg
tcatgggatctggactacctcaaaaccttgtggaatgccatccagcaagcgtacagccag
cacaaaggcccaaccctgctgtatcaggaaagcaacgtcattatccgtgcgctgcgtgac
tatttccgccgtgacatcggtgaaatcgtcatcgacaacgaaaaagtcttccagcaagca
cgtgatttcatgcaggcagtcatgccgcacaatatccgcaagctcaaggcatacaccgac
ggcacaccactgttcagccgcttccaggttgaaaatcagatcgaaacagcctatcagcgc
acggttgccctgccctcgggcggcgcgattgtcatcgaccataccgaagcattggtttcc
atcgacatcaactcagcgcgtgccaccaaagggcatgacatcgaagaaaccgccctcaat
accaatctggaagccgctgacgaaattgcccgccaattgcgcctgcgtgaccttggtggc
ctggttgtcatcgacttcatcgacatgctgcccagcaaacaccagcgcgaagttgaaaaa
cgcctgcgtgatgccatgaaactcgaccgcgcacgcgtacaagtcgggcgcatctcccgc
ttcggcttactggaaatgtcacgccaacgcctgcgcccatcgcttggtgaatccagccaa
atcgtttgcccacgttgcaccgggcatggtcatattcgcagcaccgactcaatggcgctt
tccatcctgcgtctggtcgaagaagaagccatgaaggaaatgaccggcaaagtcattgcc
cgcttgccggttgctgtcgcaacgttcctgctgaacgaaaagcgccaagccatcaccgac
atccaagcgcgtcgcaatgttgagctgaccatcatccccaacccttacatggaaacgccg
cattacgacatcagtcgcatccgcaacgataacctcgaagacgatgaagcccaaagcagc
tacctgtacattccagcgccgcctaacattgaagaaaccatccagcaggatgccaatcac
gcgccagtcccggtcgaagctgccgtcaccaacgtcatgcccagcactccggcacctcaa
caccagcgccatcaacgtgctgatgaagaagtcttaaccgcgcctcctataccagcagca
gctccagtcaaaggccccggcttgatgcgccgtattttcggcagcctgtttggcagcagc
ccaaccgtggacaaagccgcagaagaagccgaaaacaaagccgaagccgccactccgcaa
ccgcaaccacgcggcgaccgccgcaacgaccagcgcaacaaccgcaaccgtaacaatggc
agaaacgacgcggtctcagacgctgaacaccccgccactgacgagtcacgcaaccgcaac
gctcaggataaccgccaacgccaaaaccgcaatggcgagcgtaacaacgaccaacgtgac
aatgaccagtccagtaataacgagcgccgtaacaaccgtaaccgcaatgagcgagacaac
acgagcgagcaaaatcgccgcccgccacgcgagcaacgcccacccagaacgcaggagcca
gacacggcttcagcacaaggtcatgaccagacacctgtcgaaatcaccctgtctgcaccg
cgtgacacacgtgacaacaaccgcgacaacgggcaacagccccaaagccgccgtgaccgt
tcacgtcgtgacccgcgtaaccgtcaacgccccgaagaaaccaacagcgatacgacacca
gccaataacagtgttccgcaggatgccgccccacaagaacggcaacgcaacccgcgtcag
caacgccccagaggcaatgaaacaacacctgttaacgaaatagacgacaacaacttgcca
ccggatcagcaacaagcagatacacaaccgcccaacagaaaccgccgcaatcaggtcgct
gctcccagccttcctgaaaccgatgccaacgacttcgatgatgacgcaatggatgatgcg
gacgcagacgttgaaagcggcgacaacaccacggcaaccagcagcgacatccaaccacgc
ggcccccgcgaacgtcgtggtcgtactcgtcgcccacgcggcagccaaaaccgtcagcaa
cgcccgccccgccctgcatctgccgaactggaaccactgcctgctgaaaatctggaaccg
ctcattatcgacctgagcgccgcgcaacctgcacaacagccccgctacgagcgccaacca
cctaaaacggaaggcagacccgtccctgttgtcattcaggtttcaccccctgaaacaccc
cctgaaccgcaggaacgcaagccaaaagcaccggttcaaccagaacccaagccaaaagcc
gaggccacgccggaagtacaagttcaaccagaacccaagccaaaagccgaggccacgccg
gaagtacaggttcaaccagaacccaagccaaaagccgaggccacgccggaagtacaagtt
caaccagaacccaagccaaaagctaaggccaagctagaagtacaggctcaaccagaagca
gcgcccattgcaaaacctgtgcctgccccgaagcctgaacccgcacctcctgctgacgca
gtggcagaaattgttgctgacaaaccggtggctccaccagaagttgttgctgacaaacca
gcgactccaccagaacctgtagctgagccaaaaatccccgaaacggtcagcgccacagaa
ccgaaaccagcagcacctgcaccgatgaaacggcgtccatcatggatgcacaccgaacct
gagtga
DBGET
integrated database retrieval system
