Thiothrix litoralis: J9253_03060
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Entry
J9253_03060 CDS
T07754
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tlo
Thiothrix litoralis
Pathway
tlo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J9253_03060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tlo03019
]
J9253_03060
Enzymes [BR:
tlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J9253_03060
Messenger RNA biogenesis [BR:
tlo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J9253_03060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
UvrD-helicase
AAA_22
HI1480
Motif
Other DBs
NCBI-ProteinID:
QTR46938
UniProt:
A0ABX7WX27
LinkDB
All DBs
Position
635052..636398
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AA seq
448 aa
AA seq
DB search
MLFSELGLSEPLLRAISEQGYDTPTPIQAQGIPAVLSGRDIMAAAQTGTGKTAGFTLPML
HLLSANGNQPKSNHIRALVLTPTRELAAQVGESVRDYGKHLPISSTVVFGGVSANPQMMA
LRRGLDVLVATPGRLLDLYDQNAVRFSQVEMLVLDEADRMLDMGFIRDIRKILALLPKRR
QTLMFSATFSDDIVALTKGLLNNPVQISVSPRNAAAKTVTQSVYLIDKARKTSLLSHLIR
ENQWEQVLVFSRTKHGANRLAEKLERDGVTAAAIHGNKSQGARTKALADFKQGNIRVLVA
TDIAARGLDIEQLPHVINFELPNVSEDYVHRIGRTGRAGATGEAISLVEPEEYGFLKGIE
KLIKQQLPRETLPTISVAPTRQLTAAEIAKDAEADRPRPAQHRPANRRSSSQKSDVRKAA
GLPPVKKAEGAASKPRRRRPNKPKAGVA
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgctattttctgaactcggcttgtccgagccgctgttgcgtgccatcagcgaacagggt
tatgacaccccaactcccattcaagcacaaggtatccctgccgtcctttctggtcgtgac
atcatggctgctgcgcaaacgggcacaggcaaaactgctggtttcaccttaccgatgctg
cacttgctttcggctaacggcaaccagcctaaatccaatcatattcgcgccctcgtgctt
accccaacccgcgaactcgcggcacaggttggcgaaagcgtgcgtgactacggcaagcat
ctgccgatcagctctaccgtggtgtttggtggcgtgagtgccaacccgcaaatgatggcc
ttgcgccgtgggttggatgtactggtggcaacaccggggcgtttgctggacttgtacgac
cagaatgccgtgaggttttcccaagtggaaatgctggtgctggacgaagctgaccgcatg
ttggacatgggcttcatccgcgacatccgcaagattctggcgttgctgccgaagcgtcgt
caaaccctgatgttctctgccacgttttccgatgacatcgttgcactgaccaagggcttg
ttgaataacccggtacaaatctcggttagcccgcgcaatgcagcagccaagacggttaca
cagtcggtttacctgattgataaagcccgtaaaacgtccttattgagtcatttgattcgt
gagaatcagtgggaacaagtgctggtcttctcgcgtaccaagcacggcgcgaaccgtttg
gctgaaaagcttgagcgtgatggtgttaccgccgccgctatccacggcaacaaaagccaa
ggggcgcgaaccaaagcactggccgatttcaagcaaggcaatatccgtgtattggtggca
accgacatcgctgcacgtggtctggacattgaacagttgccgcacgttatcaatttcgag
ctgccgaatgtctcggaagattacgtacaccgcatcgggcgtaccgggcgtgcaggcgca
acgggtgaagcgatttcactggtggagccggaagaatacggtttcctgaaaggcatcgaa
aaactcatcaagcagcaattgccgcgtgaaacattgccaaccatcagtgttgcaccgacc
cgtcaattgaccgccgccgagattgccaaggatgcggaagctgatcgcccgcgccctgcc
cagcatcgtcctgcgaatcgccgtagcagctcgcagaagagtgatgtccgcaaagcggct
ggtttaccgccggtgaaaaaagccgaaggtgctgccagcaagccgcgtcgccgtcgccct
aataagccgaaagcaggcgtcgcgtaa
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