Thiothrix litoralis: J9253_04930
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Entry
J9253_04930 CDS
T07754
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
tlo
Thiothrix litoralis
Pathway
tlo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J9253_04930 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tlo03400
]
J9253_04930 (uvrA)
DNA repair and recombination proteins [BR:
tlo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J9253_04930 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
J9253_04930 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
AAA_16
AAA_23
nSTAND1
AAA_21
RsgA_GTPase
AAA_18
nSTAND3
AAA_25
DnaJ_CXXCXGXG
cobW
Viral_helicase1
ScfRs
Motif
Other DBs
NCBI-ProteinID:
QTR47286
LinkDB
All DBs
Position
1024525..1027344
Genome browser
AA seq
939 aa
AA seq
DB search
MEKFIRIRGARTHNLKNIDLDLPRDKLIVITGLSGSGKSSLAFDTIFAEGQRRYVESLSA
YARQFLSMMEKPDIDHIEGLSPAISIEQKTTSHNPRSTVGTITEIYDYLRLLYARAGKPR
CPTHAIDLEVQTVSQMVDQVLSLPEGSKLMLLAPVVRDRKGEHLQLFESLRAQGYLRARI
NGEVYDLDNVPALELRKKHTIEVVVDRFKVRDDMQLRLAESFETALKLANGIARVAPMEG
EGEEMVFSANYACPHCGWALAELEPRLFSFNAPAGACQTCDGLGVEQFFDPQRVVVNPSM
SLAGGAVRGWDRRNAYYFQMLTSLADHFHFDVEQPWDELPAAVHKLILSGSGLEEVEFTY
VGQKGQVYQRSHTFEGVLNNLKRRYRETDSNAVREELSKYLASRACPDCGGTRLNEQARN
VFIAGKNLPSTTHMAIGESHAFFRDLQLPGTQGKIAEKIVREITLRLAFLVNVGLDYLTL
SRSSETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLKTLFHLRDLGNT
VIVVEHDEDAIRSADYVLDIGPGAGVHGGYIIAQGTPDEVFATPDSVTGQFMSGRRSITI
PAQRTPFDPERTLKVVGATGNNLNDVTLEIPLGLLTCITGVSGSGKSTLINRTLFPFLAR
HLHDSSVDVAPVREVLGADQIDKIIDIDQSPIGRTPRSNPATYTGVFTAIRDMFAATQEA
RSRGYQPGRFSFNVKGGRCEACSGDGLIKVEMHFLPDVYVTCEVCEGKRYNRETLDVRYK
GKNISEVLAMTVEDACEFFAAVPSIHTKLQTLMDVGLSYITLGQNATTLSGGEAQRVKLA
KELSKRGTGKTIYILDEPTTGLHFHDVDQLLKVLHRLRDGGNTVVVIEHNLDVIKTADWV
VDLGPEGGSRGGNIIAVGTPEQVAEVEGSFTGHFLKRML
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaattcatccgcattcgcggcgcacgtacccacaacctgaaaaacatcgacctc
gacctgccgcgtgacaagctgatcgtgatcaccgggctgtcgggttcgggcaagtcgtcg
ctggcgttcgacacgatctttgcggaagggcagcggcgctacgtcgagtcgctgtcggcc
tatgcccgccagttcctgtcgatgatggaaaagccggatatcgaccacatcgaagggctt
tccccagcgatttccatcgagcagaaaaccacctcgcacaacccgcgttccaccgtcggc
acaatcaccgagatttacgactacctgcgcctgctctacgcccgcgcaggcaagccgcgt
tgcccgacccacgcaatcgacctcgaagtgcaaaccgtcagccagatggtcgatcaagta
ttgtccttgccggaaggcagcaagctgatgttgcttgcccccgtggtgcgtgatcgcaag
ggcgaacacctgcaactgtttgaatcgctgcgggcgcaaggctacttacgggcgcggatc
aatggcgaagtctacgatctggacaatgtgcccgcgctggaattgcgcaagaaacacacc
atcgaagtcgtggtcgaccgtttcaaggtacgtgacgacatgcagctacgcctcgcggaa
tcgtttgaaaccgcgttgaaactcgccaacggcattgcgcgggtcgcaccgatggaaggc
gagggcgaggaaatggtgttttcagccaactacgcctgcccgcattgtggctgggcactg
gcggaactcgaaccgcgcctgttttccttcaacgcgcccgccggagcgtgtcagacctgc
gacgggctgggcgtggaacaatttttcgacccgcaacgggtggtggtaaacccatccatg
agccttgcgggtggcgcagtgcgcggctgggatcggcgcaacgcctactacttccagatg
ctgacgtctttggccgaccatttccattttgacgtggaacagccgtgggatgaattgccc
gccgctgtccacaaactgatcctgagcggcagcggtttggaggaggtggaattcacctac
gtcgggcaaaaaggccaggtctaccagcgttcgcacacctttgaaggcgtattgaacaac
ctcaagcgccgttaccgcgaaaccgattccaacgcggtgcgcgaagaattgtcgaaatac
cttgccagccgtgcctgccccgattgcggtggtacgcgcctcaacgaacaagcccgcaac
gtgtttatcgcgggcaaaaacctgccatccaccacccacatggcgataggcgaaagccat
gcatttttccgcgacctgcaattgcccggcacgcaaggcaagattgccgaaaagatcgtg
cgtgaaatcaccttgcggttggcgtttctggttaacgtggggctggattatttgaccctg
agccgcagttcggaaaccttgtccggcggtgaagcgcaacgcatccgccttgcctcgcaa
atcggcgcggggctggtcggggtgatgtacgtgctggatgagccatccatcggcttgcac
cagcgcgacaacgaacgcttgctgaaaacgctgttccacctgcgtgacctcggcaatacc
gtgatcgtggtggaacacgacgaagacgcgatccgttccgccgattacgtgctggatatt
ggccccggtgcgggcgtgcatgggggctacattatcgcgcaaggcacgccggacgaagtg
tttgccacgccggattcggtcacggggcaattcatgtccgggcggcgcagcattaccatc
cctgcccagcgcaccccgtttgacccggaacgcaccttgaaagtggtcggcgcgaccggc
aataacttgaatgatgtgacgctggaaattccgctgggcttgctgacctgcatcacgggc
gtgtcggggtcgggcaaatcgacgctgatcaaccgcacgctgttcccgtttctggcgcgg
catctgcacgacagcagcgtggacgttgccccagtgcgtgaagtgttgggcgcggatcag
atcgacaagatcatcgacatcgaccaaagcccgattgggcgtactccgcgttctaatcca
gccacttacaccggggtgttcactgcgattcgcgacatgttcgcggccacgcaggaagcg
cgttcacgaggctaccagcccggcaggttctcattcaacgtcaagggcgggcgctgcgaa
gcctgttccggcgacggtttgatcaaggtggagatgcacttcctaccggatgtttatgtg
acgtgtgaagtgtgcgaaggcaagcgttacaaccgcgaaacgctggacgtgcgctacaag
ggcaagaacatcagcgaagtgctggcgatgacggtggaagatgcctgcgaattcttcgcc
gctgtgccgtcgatccacaccaaactgcaaacgctgatggacgtggggttgtcgtacatt
accttggggcagaacgctaccacgctctccggcggtgaagcgcagcgggtcaagctggcg
aaagagttgtccaaacgcggcacgggcaagacgatttacattctggatgagccgaccacc
gggctgcatttccacgacgttgaccagttgttgaaagtgctgcaccgcttgcgcgatggc
ggcaataccgtggtggtgattgagcacaatctggatgtgatcaagacggcggattgggtg
gtggatttgggacccgagggcggaagtcgcggcgggaatatcattgcggtcggtacgccg
gaacaggtggcggaggtggaagggtcgtttaccgggcatttcctcaaacggatgttgtga
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