Thiothrix litoralis: J9253_08370
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Entry
J9253_08370 CDS
T07754
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tlo
Thiothrix litoralis
Pathway
tlo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J9253_08370 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tlo03400
]
J9253_08370 (mfd)
Enzymes [BR:
tlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J9253_08370 (mfd)
DNA repair and recombination proteins [BR:
tlo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J9253_08370 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
AAA_30
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
QTR47914
LinkDB
All DBs
Position
1723653..1727138
Genome browser
AA seq
1161 aa
AA seq
DB search
MPALLKPHLPPAPNGHIRWGQLYGCSHEWLIAQSAQGFDGLLLLVVPDVHAAYQAESALQ
FFAPDIPSHIFPDWETLPYDVFSPHEDIISERLKTLATLQNLKRGILIVPASTLLHRLAP
PGYVHGHTFVVRKGSPLDIDKLRKQLEEAGYRNVSQVMEHGEYATRGSLVDLFPMGSNTP
YRIDLFDDEIDSIRTFNPETQLTEEKVDSIELLPAREFPLDEAGIRTFRQNYRAQIEGDL
TRSRIYEGVSQGKPSAGIEYYLPLFFEHTATLFDYLPKKTLLVLTEGVDTAISRFWKSLE
DRYEQRRHDIERPLLAPEKLFLTAAMLGSYLTDYPRVEAQHRRGVLHTPSSSDHDAEEGR
MQYAPTVDYPVSALPSLLIHARQEQPLFLLLNFIKDLKGRVLFTAESAGRREAFLTLLKD
NGIVVKTLETWQDFLGSKAEMAVTVAPLENGFWLPDAKIAVIPENLLHGVQIQQQRRRRK
ATRDADAIIRNLTDLNEGAPVVHEEHGVGRYLGLETVTAGGVTAEYLLIEYANHDKLYVP
VAALHLVSRYTGADPEHAPLHRLGNEQWDKARQKAAEKARDVAAELLDIHARRAAQQGHS
FPFDDNDYRLFAGAFPFEETPDQALAIENVIKDMRAPQPMDRVVCGDVGFGKTEVAMRAA
FVAANAGKQVAMIAPTTLLTQQHLNNFRDRFADWPFNIESLSRFKTGKETNTALEALASG
KIDIVIGTHKLLQDDVHFKQLGLVIIDEEHRFGVRDKEQMKKLRANVDMLTMTATPIPRT
LNMSLSGLRDLSIIATPPTQRHAIKTFVCEWNKTIIQEACARELSRGGQVYVLHNEVKTI
ANVEAELTAMLPGVTVRHAHGQMRANELENIMSDFYHQRFQILIATTIIESGIDVPTANT
ILINRADKLGLAQLHQLRGRVGRSHHRAYAYLIAPPKSALTPDAVKRLEAIESLEELGVG
FTLATHDLEIRGAGELLGEGQSGQIQEIGFNLYNDLLERAVKALKSGKVPELSATSRRTT
VELGAPALIPDAYLPDVHARLILYKRIASAESQAALDELRVEMIDRFGLLPEPTKTLFSV
TRVKLLAQELGIRKLDMHVKGGRIIFDDKPNIDPMKVITLIQKRPWVFKLDGQDKLRFEI
ELPTVEEREEWVVKLMGEIGG
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcattgctcaagcctcatcttcctcccgcccccaatggacacatccgctggggg
cagttgtacggttgctcccacgaatggctgattgcccagtctgcccaagggtttgatggc
ctgttactactggtcgtcccggatgtacatgccgcttatcaggccgaatccgcgctgcaa
ttctttgcccccgacattcccagccatatatttcctgactgggaaaccctaccctacgac
gtattttcaccgcacgaagacattatttccgagcgcctgaaaacgctggcgacgctgcaa
aatctcaaacgcggcatcctcatcgtgcctgccagcaccttgctgcaccggcttgcgcca
cccggttacgtgcatgggcatacgttcgtggtgcgcaaaggttcgccgctcgacatcgac
aaattgcgcaagcaactcgaagaagcaggctaccgcaacgtcagccaggtgatggaacac
ggcgaatacgccacccgtggctcgttggtggatttgttcccaatgggtagcaacacacct
taccgcattgacttgtttgacgacgaaatcgactcgatccgcaccttcaacccagaaacc
cagcttaccgaagagaaggtggacagcattgaactgctacctgcccgcgaattcccgctg
gatgaagccggaatccgcaccttccgccagaactaccgagcgcagattgagggcgatttg
acccgcagccgcatttacgaaggcgtgagtcagggcaagccttccgccgggatcgagtat
tacctgccgctgttctttgagcataccgccacgctgttcgattacctgccgaagaaaacc
ctgttggtgctaaccgaaggggttgatactgccatcagccgcttctggaaatcgctcgaa
gaccgctatgaacaacggcggcatgatattgaacgccccttgctggcgccggaaaagctg
tttttgacggcggcgatgttggggagttatttgacggattaccctcgggttgaagcgcag
catcgtaggggcgtattgcatacgccctcttcctccgatcatgatgccgaagaagggcgt
atgcaatacgcccctacggtggattatccggtttctgccctgccctcgctgctgatccac
gcccgtcaggaacaaccgctgttcctgctgctcaatttcatcaaagacctgaaaggccgg
gtgctattcaccgccgaatccgctggacggcgcgaagccttcctcacgctgctgaaagac
aacggtatcgtggtcaaaacgctggaaacctggcaggatttccttggcagcaaagccgaa
atggcggttacagtcgcgccgctggaaaacggtttctggttgcccgacgcgaagatcgca
gtcatccccgaaaacctgctgcacggggtgcaaatccagcagcaacgccgtcgccgcaaa
gccacccgcgatgccgatgcgattatccgcaacctgaccgacctcaacgaaggcgcacct
gtggttcatgaggaacacggggttgggcgttatctggggctggaaacagtcacggcgggc
ggcgttactgccgaatatttgctgatcgaatacgccaaccacgacaaattgtacgtgccc
gttgccgcgctgcatctggtcagccgttacaccggggctgacccggaacacgcgccgctg
caccgcctcggcaatgagcagtgggacaaagcacgccaaaaagcagcggaaaaggcgcgg
gatgtggcggcggaattgctcgacatccacgcccgccgtgcggcgcaacaggggcatagc
ttcccgtttgacgacaacgattaccgcctgtttgcgggcgcgttcccgtttgaagaaacg
ccagatcaggcgctggcgattgaaaacgtcatcaaggacatgcgtgcgccacagccgatg
gatcgggtggtgtgcggcgacgtgggtttcggcaagaccgaagtagcgatgcgggcggca
ttcgtggcggcgaatgcaggcaagcaggtggcaatgattgcgccgacgaccttgctgacg
cagcagcatttgaacaatttccgcgaccgttttgccgactggccattcaatatcgaatcg
ttgtcgcgcttcaagacgggcaaggaaaccaatacggcactggaggcgctcgcctccggc
aagatcgacatcgtgatcggcacgcacaaactgttgcaggacgatgtgcatttcaagcaa
ctggggctggtgattatcgacgaggaacaccgctttggggtgcgcgacaaggagcagatg
aaaaagctgcgtgccaatgtcgatatgttgaccatgaccgccacgccgattccgcgcacg
ctgaatatgtcgctgtcgggtttgcgcgatttgtcgatcattgccaccccgccgacgcaa
cgccacgcgatcaagactttcgtgtgcgagtggaacaagaccatcattcaggaagcgtgt
gcgcgcgaattgtcacgcggcgggcaggtgtacgtgctgcacaatgaggtcaaaaccatt
gccaatgtggaagcggaattgaccgcgatgttacccggtgtgacggtgcgccatgcccac
gggcagatgcgggcgaatgagctggaaaacatcatgagcgatttttaccaccagcgtttc
cagattctgattgccaccaccatcattgaaagcggcatcgacgtgccgaccgccaacacg
attttgatcaaccgcgccgacaaactggggctggcgcagttgcaccagttgcgcggacgg
gtcgggcgttcgcaccaccgcgcttatgcctatttgattgcgccgccgaaatccgcgctc
acgccggatgcggtcaaacggctggaagcgattgaatcgctggaagaactgggggtcggt
tttacgttggcgacgcacgatctggagattcgcggcgcgggcgaattgctcggcgaaggg
caaagcgggcagattcaggaaatcggtttcaacctctacaacgacttgctggaacgcgcg
gtgaaggcgttgaagtcgggcaaagtgccggaattgagtgccaccagccgccgcaccacg
gtggaactgggtgcgcctgcgctgatcccggacgcttatttgccggatgtccatgcgcgg
ctgatcctctacaaacgcattgccagcgcggaatcgcaggcggcactcgacgaattgcgg
gtggaaatgatcgaccgcttcgggctgctgccagagccgaccaagacgctgttcagcgtc
acgcgggtcaagctgctggcgcaggagctgggcatccgcaagctggatatgcacgtcaag
ggcgggcggattatctttgacgacaagccgaatattgacccgatgaaggtgattaccctg
atccagaaacgcccgtgggtgtttaagctggatgggcaggataagttgcggtttgagatt
gaattgccgacggtggaggagcgggaggagtgggtggttaagttgatgggggagattggc
gggtga
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