Thiothrix litoralis: J9253_09915
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Entry
J9253_09915 CDS
T07754
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
tlo
Thiothrix litoralis
Brite
KEGG Orthology (KO) [BR:
tlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tlo03009
]
J9253_09915 (rlmD)
Enzymes [BR:
tlo01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
J9253_09915 (rlmD)
Ribosome biogenesis [BR:
tlo03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
J9253_09915 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_25
Methyltransf_31
Methyltr_RsmB-F
RrnaAD
TRAM
Methyltransf_11
PCMT
MTS
Cons_hypoth95
Methyltransf_15
TRM5-TYW2_MTfase
Methyltransf_23
Ubie_methyltran
N6_N4_Mtase
Methyltransf_4
Motif
Other DBs
NCBI-ProteinID:
QTR48198
LinkDB
All DBs
Position
complement(2045961..2047310)
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AA seq
449 aa
AA seq
DB search
MSRHRNRKPKGIQNSPLIETTIESLTLEGQGVTHIEGKTVFIDGALPGETVAFRYTSHKP
KHDIGKVETILSPSPDRVEPRCEHFGVCGACSWQHISLEAQIRYKQRAMLDNLKHIGKAE
PETVFAPLTAEGWAYRRKARLGAKWVRKKDKALVGFREKEGGFLAELNRCEILHPSLGEH
LLDFQALIASLDARESLPQIEVAVGDGDNATALIFRHMEELSEGDTEKLLAFGKQFNYQI
YLQPKGPETVHCIWPENPALYYEHPQFNTKVGFMPLDFIQVNQPLNRKMVARALELLAPE
PTDTVLDLFCGLGNFTLPLARVAAQVIGVEGEQTMVERARAAAHANGIMNTDYHVCNLMG
DNLQHEPWLKKNRYDKILLDPPRAGAKEIIAHFGKLNAGRIVYVSCDPATLARDTYELVH
EHGYRLVGAGVMDMFPHTSHVESIAVFEK
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgagccgacacagaaacagaaaacccaagggtattcaaaacagcccgctgattgaaact
accattgaatcgctaacccttgaaggccaaggtgttactcacattgagggtaaaaccgtg
ttcatcgacggcgcattgccgggtgaaaccgtcgccttccgttacacctcgcacaagccc
aagcacgacatcggcaaggttgaaaccatcctcagcccttcgccggatcgggttgaaccg
cgttgcgaacatttcggcgtatgtggcgcgtgtagctggcaacacatctccctcgaagcg
caaatccgctacaaacaacgtgccatgctcgacaacctcaagcacattggcaaagccgag
ccagaaaccgtgtttgcgccactcaccgctgagggttgggcataccgccgcaaagcccgt
ctcggtgcaaagtgggtacgcaaaaaagacaaggcgctggtcggctttcgcgaaaaagaa
ggtggctttctcgccgaactcaatcgctgcgaaatcctgcatcccagccttggtgaacac
ttgctcgactttcaagcactgattgccagtctggatgcccgcgaatctctcccgcaaatc
gaagtggcggtgggggatggcgacaatgccaccgcgctgattttccgtcacatggaagag
ctttctgaaggcgatactgaaaagttgttagcgtttggcaagcaatttaattatcagatc
tatttgcagccgaaaggcccagaaactgtccattgtatctggccggaaaacccggcgttg
tattacgaacacccgcaattcaacaccaaagtgggcttcatgccgctggatttcattcag
gtcaaccagccgctgaaccgcaagatggtagcgcgtgcgttggaattgcttgcgcctgaa
ccaacggacactgtgctggatttattctgcggcttaggcaacttcaccctgccattggcg
cgagtcgctgctcaggtcatcggcgtggaaggcgaacagacgatggtggaacgcgcccgt
gctgcggctcacgccaatggcatcatgaataccgattaccacgtttgtaacctgatgggc
gacaacttgcagcatgagccgtggttgaagaaaaatcgctacgacaagattttgcttgac
ccgccacgcgcgggtgcgaaagaaatcattgcccatttcggcaagctcaacgcggggcgg
attgtgtatgtgtcgtgtgacccggcaacgctggcgcgggatacttacgaattggtgcat
gagcatggctatcgcttggtgggggcaggggtgatggatatgttcccgcatacctcgcat
gtggagtccatcgcggtgtttgaaaaataa
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