Thiothrix litoralis: J9253_14025
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Entry
J9253_14025 CDS
T07754
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
tlo
Thiothrix litoralis
Brite
KEGG Orthology (KO) [BR:
tlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tlo03019
]
J9253_14025 (hrpA)
Enzymes [BR:
tlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
J9253_14025 (hrpA)
Messenger RNA biogenesis [BR:
tlo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
J9253_14025 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
SRP54
T2SSE
AAA_23
SLFN-g3_helicase
PhoH
AAA_25
NTPase_1
AAA_30
NACHT
AAA_24
Motif
Other DBs
NCBI-ProteinID:
QTR48442
LinkDB
All DBs
Position
2902303..2906046
Genome browser
AA seq
1247 aa
AA seq
DB search
MTLDSYLIVSNLIQKRALRLQNLPKPEYPEELPVAARRAEIIKAIAAHQVVIICGETGSG
KTTQIPKMCLELERGVNGFIGHTQPRRIAARSVAARIAEELKVQLGQQVGYKVRFHDRCS
PDSYVKLMTDGILLAEIQQDRYLKQYDTLIIDEAHERSLNIDFLLGYLKWLLPKRRDLKV
IITSATIDPERFSQHFDNAPIINVSGRTYPVDIRYRPLVDVDAEEEFERDQTQAILDAVD
ELGREAPGDILIFLPGEREIRETAEALRKHHPPATEILPLYARLSNEEQHRIFEPHGRRR
IVLSTNVAETSLTVPGIKYVVDSGYARISRYSWRAGVQRLPIEKVSQASANQRSGRCGRV
SNGITIRLYSEDDFNKRPVFTEPEILRTNLAAVILQLATMWTADVENFPFVEPPDTRLIR
DGYKLLFEIGAVDADYNVTPSGHQLAKLPLDPRYGRMLLAAQENGALREALIIVSALTLQ
DPRERPLDKQQASDEKHSRFKDEHSDFLGFLKLWDYYHEQRKHLTQRKFRELCKKEFLSF
MRLREWHDIHQQLHQMLAEMGCKENASEASYDAIHLSLLTGLLGNIGMKDEDREYMGAGG
RKFHLFPASSLRKKPPQWVMAAELVETSRLFGRTIARIQPEWIEKLAAHLLRHHYTEPHW
EQKQAQVAAFERTSLYGITITPRRKVNYGRIDPEVCREIFIRHALVYGEYRTPAPFFQYN
AELIADIETLEAKGRRRDILADEHRLYEFYEQRIPAHVVNGPTFERWRKKAEQKDSQLLH
LSRDYLMQREAGHEKSGQYPDTLSVQGMILPLRYHFDPKAEDDGVTVRVPLLGLNQLAVI
RFDYLVPGMLEEKITALIRALPKPIRKQFVPAPDYARACLESIQPSDTVPLQAAVEKHLL
RMTGSQIPPEAWVDVALPNHLQMRFEVADETGKVIRSGRDLETLRGKVRQQTRQELASKP
VQSIERVGITAWDFGDLPELYWLEAGGTKLRTWPALVDANNSVTIRLFDNEADATQAHWQ
GVLRLFLLTLPGEVKDVPKYVPSMQTLCLHYAATGKCDELKESITRYVFRQVFADYLNIR
KQASFEHALGEGRRQIFPQTQETARLLAPILALYHELRKQLKGKMQPSWLEALNDISDQL
NHLVYVGFLDTVSPEELRHFPRYLKGIQRRLQKLAENPTKDRALRVQVQPYWDQWKAKKH
RESSEHASEYRWMLEEFRVSLFAQELGTARPVSAKRLDELWKKALTE
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
ataacgctggattcctacctgatcgtgagcaaccttattcaaaaacgcgccctgcgcctg
caaaacctccccaagcccgaatacccggaagaacttccggtagcggcgcggcgtgccgaa
atcatcaaggccattgcagcacatcaagtcgtcatcatttgcggcgaaaccggctccggc
aaaaccacccaaatccccaaaatgtgtctggaactggaacgcggggtcaacggcttcatc
ggccacacccaaccacgccgcattgccgcacgtagcgtcgccgcccgcattgccgaagaa
ctcaaggtgcaactagggcaacaggtcggctacaaagtccgtttccacgaccgctgttca
cccgacagttacgtgaaactgatgacggatggcatcctgctggcagaaatccagcaagac
cgttacctcaaacaatacgacaccctgatcattgatgaagcgcacgaacgcagcctcaat
atcgacttcctgctcggctacctgaaatggctgcttcccaaacgtcgcgacctgaaggta
atcatcacctcggccaccatcgacccggaacgcttttcacaacactttgataatgcacct
attattaatgtatccgggcgtacctacccggtagacatccgctaccgccccttggtggat
gtggatgccgaagaagaattcgagcgtgaccaaacccaagccattctggatgcggtggat
gaactggggcgcgaagcccccggcgacatcctgatattcctgccgggcgaacgcgaaatc
cgcgaaaccgccgaagccttgcgtaagcatcacccacccgccaccgaaattctgccgctg
tatgcccgcctctccaatgaggaacagcaccgtatttttgagccacacggacgccgccgc
atcgtgctttccaccaacgtcgcggaaacctccctcaccgtgcccggcatcaaatacgtg
gtggacagtggttacgctcgcatctcacgctattcgtggcgcgcgggtgtgcaacgcttg
ccgattgaaaaagtctcgcaagcctctgccaaccagcgttccgggcgctgcggacgggtc
agcaacggcatcaccatccgcctctacagcgaagacgatttcaacaaacgtccggtgttt
accgagccggaaatcctgcgcaccaacctcgctgccgtcatcctgcaacttgccaccatg
tggacagcggatgtggaaaatttcccgttcgtcgaaccacccgatacccggctaatccgc
gacggttataaactgctgtttgaaatcggcgcagtggatgccgattacaacgtcaccccc
agcggacaccaactcgccaaactgccgctcgatccacgctacgggcgcatgttactggca
gcgcaggaaaacggcgcattacgcgaagcactaatcatcgtcagcgccctgacattgcaa
gacccgcgtgaacgccctttagacaaacaacaagcctccgacgaaaaacacagccgcttc
aaggacgagcactccgatttcctcggtttcctaaaactctgggattactaccacgaacaa
cgcaaacacttgacccaacgcaagttccgcgaattgtgcaagaaagaattcctgtcgttt
atgcgcctgcgtgaatggcatgacattcaccaacaactccatcaaatgctcgccgaaatg
ggttgcaaggaaaacgcgagcgaagccagctacgacgccatccacctcagcctgctgacc
ggcttactcggcaatatcggcatgaaggatgaagaccgcgagtacatgggcgcgggcgga
cgtaaattccacttattccccgcctccagcttgcgtaaaaagcccccgcaatgggtcatg
gctgccgagttggtggaaacctcacgcctgttcgggcgcaccatcgccagaatccagcca
gaatggatcgaaaaactcgccgctcacctattacgccaccattacaccgagccacactgg
gaacaaaaacaggcacaagtagccgcgtttgaacgcacctcgctgtacggcattaccatt
accccgcgccgcaaggtcaactatgggcgcattgacccggaagtttgccgtgaaattttc
atccgccacgcactggtctacggtgaataccgcacccctgcccccttcttccagtacaac
gccgaactgatcgccgacatcgaaacgctggaagccaaaggccgccgccgcgacatcctc
gccgatgagcaccggctgtacgaattttatgagcaacgcattcccgcccatgtcgtcaac
gggcctaccttcgagcgctggcgcaaaaaagccgagcaaaaagacagtcagttactgcac
ctcagccgcgattacctgatgcagcgcgaagccgggcatgaaaagagcgggcaatacccc
gataccctgtccgtacaaggcatgattctgccgctccgttatcactttgaccccaaggcc
gaagatgatggcgtcactgtgcgcgtacccttgctcggtttgaaccaacttgccgtgata
cgcttcgattatttagtgccgggaatgctggaagaaaaaatcactgcattaattcgcgcc
ctccccaagcccatacgcaaacagtttgtgcccgcacccgattacgcacgagcctgcctc
gaatctatccagcccagcgacaccgttcccttgcaagctgctgttgagaaacacctgttg
cgtatgaccggcagccagattccccccgaagcttgggtagacgtggcattgcccaaccat
ttacaaatgcgctttgaagtggcggatgaaaccggcaaagtcatccgcagcgggcgggat
ctggaaaccctgcgcggtaaggttcgccagcaaacccgtcaggaactggcctccaaaccc
gtgcagtccatcgaacgggttggcatcaccgcgtgggatttcggcgatttgcccgaactt
tattggttagaagcaggcggaacaaaattacgcacttggcctgccttggtcgatgccaac
aacagcgtcaccatccgcctatttgacaatgaagccgacgctactcaagcacactggcaa
ggcgtcttgcgcctattcctgctcactttgccgggtgaagtgaaagatgtacccaaatac
gttccgtccatgcagaccttgtgcctgcactacgccgccactggcaaatgcgatgaattg
aaggaaagcattacccgttacgtcttccgtcaggtctttgcggattacctgaatatccgt
aaacaagctagttttgaacatgccttgggtgaaggccgtcgccaaattttcccacaaacg
caggaaacagcccggctactcgctcccatccttgccctgtaccacgaactgcgcaagcaa
ctgaaaggtaaaatgcaaccaagctggctggaagccctgaatgacatcagtgatcaattg
aatcatctggtgtatgtgggttttctggacacagtatcgcccgaggaattacggcacttt
ccgcgttacctcaaaggcattcaaaggcgattgcaaaaattggcggagaatccgaccaaa
gacagggcattacgggtacaagtgcaaccgtactgggatcaatggaaagcaaaaaaacac
agggagagtagcgaacatgccagcgagtatcgctggatgctggaagaattccgggtatcg
ctatttgcgcaggagctgggaaccgcaaggccggtatcggccaagcggctggatgaacta
tggaagaaagcgcttactgagtag
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