Thiothrix litoralis: J9253_17775
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Entry
J9253_17775 CDS
T07754
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
tlo
Thiothrix litoralis
Pathway
tlo03030
DNA replication
tlo03410
Base excision repair
tlo03420
Nucleotide excision repair
tlo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J9253_17775 (polA)
03410 Base excision repair
J9253_17775 (polA)
03420 Nucleotide excision repair
J9253_17775 (polA)
03440 Homologous recombination
J9253_17775 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tlo03032
]
J9253_17775 (polA)
03400 DNA repair and recombination proteins [BR:
tlo03400
]
J9253_17775 (polA)
Enzymes [BR:
tlo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
J9253_17775 (polA)
DNA replication proteins [BR:
tlo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J9253_17775 (polA)
DNA repair and recombination proteins [BR:
tlo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
J9253_17775 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J9253_17775 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
QTR45816
LinkDB
All DBs
Position
3678606..3681368
Genome browser
AA seq
920 aa
AA seq
DB search
MPNHTSKPLVLVDGSSYLFRAFHALPPLTNSHGEPTGAMHGVLNMLDKLRKDYDPEHMAV
IFDAPGKTFRDDMFPDYKANRPPMPDDLRGQIEPLLDIIKAQGYPLLIIPDVEADDVIGT
LAQEYAGKVIISTGDKDMAQLVDARVHLINTMSGLYSDPAGVVEKFGVAPERIRDYLTLI
GDTVDNVPGVNKVGPKTAVKWLAEYGSLENIMAHADEFKGKVGEYLREALAHLPLSYELV
TIKCDVALDCSPEALTFTPPDVDKLHALYERYEFRTRLAGLGKETPPNLPLSGEEQEGGA
SGSPPDKGELEGVSSAEGVSYQTILTQADLDTWLQRLQAAAEFAFDTETTSLDYMEAQIV
GVSFAISAGEAAYLPLAHDYLGAPPQLDRDATLAQLKPLLEDPALRKIGQNLKYDRSVLL
NHGIELRGIAHDTMLESYVLDSTANRHDMDTLCAKYLNHTTISFIDIAGKGKNQLTFNQI
ALEQATPYAAEDADMTLQLHQHFWPQLQALDAQCKLYEEVEVPLVSVLSSIERNGVKVDA
TMLAKQSKELETRMQEVVKQAYAAADQEFNLASPKQLGEILYTKLGLHAPRKTPKGQPST
AEDVLEELAAQGHELPTLILEHRGLAKLKSTYTDKLPEQINPRTGRVHTSYHQAVASTGR
LSSSDPNLQNIPIRTEEGRRIRQAFIADTGNKLLAADYSQIELRIMAHLSGDKGLLDAFA
HGLDVHRATAAEVFGTPLAEVSIEQRRAAKAINFGLIYGMSAFGLAKQLGVDRRDAQDYV
NLYFARYPGVKQYMDDTREQARAQGYVETLFGRRLFLPDIQSKNAVTRQYAERTAINAPM
QGTAADIIKKAMIAVAAWLRDSGLQTRMIMQVHDELVFEVPEAELETVRAQVTALMTGAV
TLDVPLVVDSGVGDNWDEAH
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgcctaatcacacctccaagccacttgtcctcgtcgacggttcttcctacctgttccgc
gcttttcatgcgctgccgccgctgaccaattcgcacggcgaacccaccggcgccatgcac
ggcgtgctcaatatgctcgacaagttgcgtaaggattacgaccccgaacacatggcggtg
attttcgatgcgccgggcaagaccttccgcgacgacatgttccccgactacaaggcgaat
cgcccgccgatgccggatgacttgcgtggtcagatcgaacccttgctggacattatcaag
gcgcaaggctacccgctgctgattatccccgacgtggaagccgacgatgtgatcggcaca
ctggcgcaggaatacgctggcaaagtgatcatttccaccggcgacaaggacatggcgcaa
ctggtcgacgcacgtgtccacctgatcaacaccatgagcggcctgtattccgacccggcg
ggcgtggtggaaaagtttggcgttgccccggaacgcatccgcgattacctcaccctgatc
ggcgacaccgtggataacgtgcccggcgtcaacaaggtcggccccaaaacagcggtgaag
tggctggctgaatacggctcgctggaaaacatcatggcacacgccgacgaattcaaaggc
aaagtcggcgaatacctgcgcgaagcactcgcgcatttaccgctttcctacgaactggtg
acgatcaaatgcgacgtggcgctggactgttcgccggaagcgctgacgtttacgccgcca
gatgtggacaagctgcacgcgttgtatgagcgttatgaatttcggacgcgcttggcgggg
ttggggaaagaaacccctcccaacctccccttatcaggggaggagcaagaaggtggcgct
tccggttctccccctgataagggggagttagagggggtttcttccgccgaaggcgtttct
taccaaactatcctcacccaagccgacctcgacacgtggctccaacgcctgcaagccgcc
gccgaattcgccttcgacaccgaaaccaccagcctcgattacatggaggcgcaaatcgtc
ggtgtctccttcgccatcagtgcgggtgaagcggcttacttgccgttggcgcacgattac
ctcggcgcaccaccgcagcttgaccgcgacgccacccttgcccaactcaagccgctgctg
gaagaccctgccttacgcaaaatcggtcagaatctgaaatacgaccgcagcgtgctgctc
aaccacggtattgaactgcgcggcattgcccacgacaccatgctcgaatcctacgtgctg
gattccaccgctaaccgtcacgatatggatacgttgtgcgcaaaatacctcaaccacacc
acgatcagtttcatcgacattgcaggcaagggcaaaaaccagctcacctttaaccagatt
gcgctggaacaggcgaccccttacgccgccgaagatgctgacatgaccctgcaactgcac
cagcatttctggccgcaactgcaagccctcgacgctcagtgcaagctgtatgaggaggtg
gaagtgccgctggtgagcgtgctgtccagcatcgaacgcaacggcgtgaaagtcgacgcc
accatgctcgccaaacagagcaaggaactggaaacgcggatgcaggaggtggtgaaacaa
gcctatgccgctgctgatcaggaattcaatctggcttcgcccaagcaattgggggaaatc
ctctacaccaaactcggcctgcacgcaccgcgcaaaacccccaaggggcagccttccacc
gctgaagatgtgctggaagaactggcagcgcaaggccatgaactgccgaccttgatcctt
gagcatcgcggtttggcgaaacttaaatccacctacaccgacaagttgccggaacagatc
aacccgcgtaccgggcgggtgcatacctcctaccatcaggcggtggcatcgaccgggcgg
ttgtcgtcttccgacccgaatttgcagaatatcccgattcgtactgaagaggggcggcgt
attcgtcaggcgttcatcgcggacacaggcaacaaactgctggcggcggactattcgcag
atcgaattgcgcattatggcgcacctttccggcgacaagggcttgttggatgcgtttgcg
catgggctggacgtgcatcgtgctaccgctgcggaagtgtttggcacgccattggctgaa
gtcagcatcgaacagcgccgcgccgccaaagcgatcaatttcgggctgatttacggcatg
tctgctttcggcctcgccaaacaactcggggttgatcggcgtgatgcgcaggattacgtc
aatctgtatttcgcccgctaccccggtgttaagcagtacatggacgacactcgcgaacag
gcgcgtgcacagggttacgtcgaaaccctgttcggccgccgcctgttcctgcccgacatc
cagtccaaaaacgccgtcacccgccaatatgcggaacgcaccgctatcaacgcgccgatg
cagggcacggctgccgacattatcaagaaagccatgattgcggtggctgcgtggttacgt
gacagcggcctgcaaacccgcatgatcatgcaggtgcatgacgaactggtgtttgaagtg
ccggaagccgaactggagactgtgcgggcgcaagtcactgcactgatgacgggggcggtg
acgctggatgtgcctttggtggtggatagcggggtgggggataattgggatgaagcgcat
taa
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