Thiothrix litoralis: J9253_19755
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Entry
J9253_19755 CDS
T07754
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tlo
Thiothrix litoralis
Pathway
tlo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tlo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J9253_19755 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tlo03021
]
J9253_19755 (rpoC)
03400 DNA repair and recombination proteins [BR:
tlo03400
]
J9253_19755 (rpoC)
Enzymes [BR:
tlo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J9253_19755 (rpoC)
Transcription machinery [BR:
tlo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J9253_19755 (rpoC)
DNA repair and recombination proteins [BR:
tlo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J9253_19755 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
DUF3150
Motif
Other DBs
NCBI-ProteinID:
QTR46178
UniProt:
A0ABX7WVA2
LinkDB
All DBs
Position
4082123..4086310
Genome browser
AA seq
1395 aa
AA seq
DB search
MKDLLNFHKKEQETQEFDAIKVGLASPEVIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVVCEKCGVEVTQTKVRRDRMGHIDLASPVAHIWFLKSL
PSRIGLLLDMTLRDIERILYFETFVVTEPGMTTLERGQLLSDEAYLEAIEEFGDEFEAAM
GAEAVLELLRSTDLKEEVARMREEIAETGSETKLKRLGKRLKLMESFINSGNKPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPA
LRLHQCGLPKKMALELFKPFIFGKLQRRGLATTIKAAKKLVERETAEVWDILAEVIREHP
VMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLEA
RTLMMATNNVLSPANGEPIIVPSQDIVLGLYYMTRDAINAKGEGMIFADPLEVQRAYDTG
NVSLHAKVKVRITDSIKDEDGEFIKRTRVLDTTVGRALLTSIMPEGLPFELFNTVLKKKA
ISKLINESYRRVGLKAAVVFADQLMYTGYRYATRAGVSFCADDMMIPEKKVELLAEAEEA
VLEIQKQFSSGLVTQGERYNKVVDIWASTNEKVAKAMMEKIGKQEVIDAEGNLVYQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITSNFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDMVVTIDDCGTVKGIKMRPIIEGGDVVEALAERVL
GRVVAQDVTRGDEVLLPAGTFLDEAWVKQIDALAIDEIVVRSAITCETRYGVCKHCYGRD
LARGHLVGKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSAAENSIAVKSGGQVHLLN
VKTVRNKDGKLVVVSRSGELGVVDTSGRDKERYKLTYGAILSVEHYGEVQAGQEVATWDP
HTHPIISEVAGQVSFSDFIDNVTVQTKVDEMTGLSSIEVMDPKNRPAAGRELRPTVRLLD
ERGDSVFFEGTKIPVQYPLPAGAIVSSTNGATVQVGEVVARLPQASSKTRDITGGLPRVA
DLFEARKPKDGAILAEKTGTISFGKETKGKQRVIITGEDGEHYEELIPKWRNLDVFEGEK
LNRGEVIADGEPNPHDILRLLGATALAEYQAKEIQDVYRLQGVKINDKHIEVIVRQMMRK
VEVIDPGDSKFLRGEQADYWRVVNTNKELEAEGKLRIVYERLLMGITKASLVTDSFVSAA
SFQETTRVLTEAAVRGARDELRGLKENVIVGRLIPAGTGLAYHDDRRSQRNEFTYERPAP
TETISFGEPMDMDSD
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttattgaatttccacaaaaaagagcaggaaacccaagagtttgatgcaatc
aaagttggcttggcttcccctgaagttatccgttcgtggtcttttggcgaagtcaaaaag
ccggaaacgatcaactaccgtactttcaagcctgaacgtgatggcttgttctgcgccaaa
atctttggcccggtcaaagactatgagtgcttgtgtggtaaatacaaacgcctgaagcac
cgtggtgttgtctgcgaaaaatgcggcgttgaagtgacccagaccaaggtgcgtcgtgac
cgtatggggcatattgacctcgctagcccggttgcgcacatctggttcctgaagtctctg
ccatcccgtattggtttgctgttggatatgacgctgcgtgacattgagcgcatcctctat
ttcgagaccttcgtggtcactgagccgggtatgacaacgctggagcgtggtcagttgctg
agcgatgaagcctatttggaagcgattgaagagttcggcgacgaatttgaagcggcaatg
ggcgcagaagccgtattagaactgctgcgttctaccgatctcaaggaagaagtcgcgcgg
atgcgtgaagaaatcgctgagacaggttccgaaaccaagctgaagcgcttgggcaagcgt
ttgaaactgatggagtcattcatcaactctggcaataagccagaatggatgatcatgacg
gtgctgccagtactgccgcctgatttgcgtccattggttccgttggatggtggtcgtttc
gcgacttccgacttgaacgatttgtatcgccgcgttatcaaccgtaataaccgtttgaag
cgtttgttggagctgaatgccccggacatcatcgtgcgcaacgaaaagcgtatgttgcaa
gagtctgtggatgcgctgctcgataacggtcgtcgtggtcgtgcgattacgggttctaac
aagcgtccgctgaaatccttgtctgacatgatcaagggtaagcaaggccgtttccgtcag
aacttgttgggtaaacgggtcgactattctggtcgttcggttatcgtggttggccctgcg
ttgcgtttgcatcagtgcggcctgcccaagaaaatggcgttggaactgttcaagccgttc
attttcggcaagctgcaacgccgtggtctggcgactaccatcaaggcagccaagaagttg
gttgagcgcgaaaccgcagaagtttgggatatcctcgctgaggttattcgtgagcatccg
gtcatgctcaaccgcgcacctactttgcaccgtttggggattcaggcatttgagccaacc
ctgatcgaaggtaaggcgatccagttgcacccgctggtatgttccgcattcaacgcggac
ttcgacggtgaccagatggcggtacacgtaccgttgtcactggaagcacagttggaagcg
cgtaccctgatgatggcgactaacaacgtcctgtcaccggcgaacggcgagccgatcatt
gtgccttctcaggatatcgttctgggtctgtattacatgacccgcgatgccatcaatgcg
aaaggcgagggcatgatctttgccgatccgctggaagtgcaacgtgcctatgataccggc
aatgtttcgctgcacgccaaagtgaaagtgcgcattaccgacagcatcaaggatgaagac
ggcgagttcatcaagcgtacccgtgtactggataccactgttggccgtgccttgttgact
agcatcatgccggaaggtctgccgtttgaacttttcaatactgtattgaagaaaaaggcg
atttccaagctgatcaatgaatcctaccgtcgcgtgggcttgaaagctgctgtcgtgttc
gctgaccagttgatgtataccggctaccgttatgcaacccgtgcgggcgtttcgttctgt
gcggatgacatgatgatcccggaaaagaaagttgagttgctggcagaagcggaagaagct
gtgctggaaattcaaaagcagttttccagcggtttggtgacacaaggcgaacgttacaac
aaggtcgttgacatctgggcgagcaccaatgaaaaagtcgcgaaagcgatgatggaaaaa
attggtaagcaggaagtcattgatgcggaaggtaacttggtttaccaagaatctttcaac
tccatttacatgatggcggattccggggcgcggggttccgctgcgcagattcgtcagttg
gcgggtatgcgtggcttgatggcaaaaccggatggttccatcatcgagacgccgattacc
tcaaacttccgtgaaggcttgaacgtcctccagtactttatctcgacgcatggtgcgcgg
aaaggcttggcggatactgcactcaaaaccgcgaactctggttacttgacacggcgtctg
gtcgatgtggcacaagacatggttgttaccattgatgattgtggcacggtcaaaggcatc
aagatgcgtccgatcatcgaaggtggtgacgtggtggaagcattggctgagcgcgttctc
ggtcgtgtggtggcgcaagacgttacccgtggcgacgaagtgttgctgccagcgggtacg
ttccttgatgaggcgtgggtcaagcagattgatgcactggcgattgatgaaatcgtggtg
cgttccgcgattacctgcgaaactcgctatggtgtttgcaagcattgctacgggcgtgat
ctggcgcgtgggcatttggttggcaagggtgaggctgtcggggttattgcggcgcaatcc
atcggtgagccgggaacccagttgaccatgcgtaccttccatatcggtggtgcggcgagc
cggtcagcggcagaaaacagcattgcggttaaatccggtggtcaggttcacctgctgaac
gtcaaaactgtccgtaacaaagatggcaagctggtcgtggtttcccgttccggtgaactg
ggcgtggtcgataccagcgggcgtgacaaagaacgttataagctgacttacggtgcgatc
ctctcggttgagcattacggcgaagtgcaagcaggccaagaagtggcgacgtgggatcca
catacccatccgatcatttctgaggtggcgggtcaggtcagtttcagtgacttcattgat
aacgtgaccgttcaaaccaaagtggatgaaatgacaggtttgtcttccattgaggttatg
gatccgaaaaaccgtcctgcggcgggtcgtgaattgcgtccaacagtacgtttgctggat
gagcgtggcgacagcgtgttctttgaaggtaccaaaattccggtgcaatacccattgcca
gccggtgcgatcgttagctccacgaatggtgcaacggtacaggttggtgaggttgtggcg
cgtttgccgcaagcgtcttccaagacccgtgacatcacgggtggtttgccacgggttgct
gacttgtttgaggcacgtaagccgaaagacggggcgattctggcagaaaaaaccggtacg
atttccttcggcaaggaaaccaagggtaagcagcgcgtgatcatcaccggtgaagacggt
gagcattacgaagagctgattcccaagtggcgtaatctggatgtgtttgagggtgaaaaa
ctcaaccgtggtgaggttatcgctgatggtgagcctaacccgcatgacatcctgcgtttg
ctgggtgctaccgcgctggcagaataccaagccaaggagattcaggatgtttaccgtctg
caaggcgtaaagatcaatgacaaacacatcgaagtcattgtgcgtcagatgatgcgcaag
gttgaggtcattgatccgggtgatagcaaattcctgcgtggtgagcaagccgactactgg
cgtgtggtaaatacaaacaaagagctggaagcagaaggcaagctcagaatcgtctatgag
cgcctgctgatggggattaccaaagcatccttggtgacggactcctttgtgtctgcggcg
tccttccaggagactacacgcgtcctgacagaggctgcggtgcgtggtgctcgtgacgag
ttgcgtggtttgaaagaaaacgtcattgttgggcgcctgattccggcaggtacgggtctg
gcctaccacgatgaccgtcgtagccagcgtaatgaatttacgtatgagcgtcctgcgcca
accgaaacgatcagttttggtgagccgatggacatggattctgattga
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integrated database retrieval system
