Thiorhodovibrio litoralis: Thiosp_00828
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Entry
Thiosp_00828 CDS
T09560
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tlr
Thiorhodovibrio litoralis
Pathway
tlr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tlr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Thiosp_00828 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tlr03019
]
Thiosp_00828 (deaD)
03009 Ribosome biogenesis [BR:
tlr03009
]
Thiosp_00828 (deaD)
Enzymes [BR:
tlr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Thiosp_00828 (deaD)
Messenger RNA biogenesis [BR:
tlr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Thiosp_00828 (deaD)
Ribosome biogenesis [BR:
tlr03009
]
Prokaryotic type
rRNA helicases
Thiosp_00828 (deaD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
GTP_cyclohydro2
CMS1
HEM4
Motif
Other DBs
NCBI-ProteinID:
WPL11100
LinkDB
All DBs
Position
complement(911173..912933)
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AA seq
586 aa
AA seq
DB search
MDQNAPKDPASEEPTLSFADLGLCEPIFRAVANLGYETPTPIQSQCIPHLLGGRDLLGQA
QTGTGKTAAFALPLLCRMRPDLNLPQLLVLTPTRELALQVAEAFQDYAAQLSQFHILPIY
GGQSSSLQIRQLKRRPQVIVGTPGRVMDHMRRGNLSLDGLQAMVLDEADEMLNMGFAEDI
DWIFEHCPDQLQIALFSATMPEAIKRVARLRLKDPIEVRVRASAETVDTIDQHHCMVARG
HKLDALTRLLEMENFDGMAIFVRTKNATTELADKLKAHGFAAEALNGDMNQEMRERTIGR
LKDGQLDILIATDVAARGLDVERLSHVINYDIPTDPASYVHRIGRTGRAGRTGRAILLIE
PRERSLLRAIERTIRRNIPAMDPPSAEALSASRIERFTKDLRQTLSEQDLDFFYRLVANL
SKEQELELMDISAALCFMLQRERPLEVEEKRLSPPPRGRDGNDRRPDRDGPRGGRDRPSR
RDQDDQLTSYRIEVGHAHGASPREIVGAIANEAGLDGRRIGRIEIRDDHSIVDLPPGMPN
DIFQHLQRVYVCGQALRIRPSDEPPSRPRPGPRSGPKKPRGNPRGR
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atggaccaaaacgcccccaaggaccccgccagcgaagagccaacgctcagctttgccgat
ctcggcctgtgcgagcccatcttccgcgccgttgccaacctcggctacgagacccccaca
cccattcagtcgcagtgcattccgcacctgctcggcgggcgcgatctgctcggacaggca
cagaccggcaccggcaagaccgccgccttcgcgctgcccctgctgtgccgcatgcgcccg
gacctgaacctgccgcaactgctggttctgaccccaacccgcgagctggccttgcaggtg
gccgaagcctttcaggactatgccgcacagctcagccagttccacatcctgcccatctac
ggcggacagagctccagtctgcagattcgccagctcaagcggcgcccgcaggtcatcgtc
ggcaccccggggcgggtcatggaccacatgcgccgcggcaatctgtcgctcgacggtctg
caggccatggtgctcgacgaagccgacgaaatgctcaacatgggcttcgccgaggatatt
gactggatcttcgagcactgcccggaccaactgcagatcgctttgttctcggccaccatg
ccggaggccatcaagcgcgtcgcccgtctgcgccttaaagacccgatcgaagtccgggtg
cgcgcatcagccgagacggtcgacaccatcgaccagcaccactgcatggtcgcgcgcggt
cacaagctcgatgccctgacgcgcctgctcgagatggaaaactttgacggcatggccatc
ttcgtgcgcaccaagaacgccaccaccgagctggccgacaagctgaaagcgcacgggttc
gccgccgaggcgctcaacggtgacatgaaccaagaaatgcgcgagcgcaccatcggaagg
ctgaaggacggccagctcgacatcctgattgccaccgacgtggccgctcgcggactcgac
gtcgaacgcctgagccatgtgatcaactacgacatcccgactgatccagcctcctatgtg
catcgcatcggccgcaccggccgcgccgggcgcaccggccgtgccatcctgctgatcgag
ccacgcgagcgcagcctgctgcgcgccatcgagcgcaccatccgccgcaacatcccggcc
atggacccgccctcggccgaagcgctcagcgcctcgcgcattgagcgcttcaccaaggac
ctgcgccaaacactgagcgagcaggacctggactttttctaccgcctggtcgccaatctg
agcaaggagcaagagctcgagctcatggacatctccgcggccctgtgctttatgctgcag
cgcgagcgtccgctggaagtggaagaaaagcgcctcagcccgccgccgcgtggcagggac
gggaacgaccgccgtcccgatcgagacggcccgcgcggcggccgcgaccgcccatcgcgt
cgcgaccaggatgaccaactcaccagctaccgcatcgaagtcggccatgcacacggcgcc
agcccgcgcgaaatcgtcggcgccatcgccaacgaggccgggctcgacggacgacgcatc
ggccgcatcgagatccgcgacgaccactccatcgtcgacctgccccccggcatgccgaac
gacatcttccagcacctgcagcgagtctatgtctgcggccaagccctgcgcatccgcccg
tccgatgagcccccaagccgcccacgacccggcccgcgctcaggcccgaaaaagcctcgc
ggcaatccgcgcggacgctga
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