Thiorhodovibrio litoralis: Thiosp_00886
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Entry
Thiosp_00886 CDS
T09560
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
tlr
Thiorhodovibrio litoralis
Pathway
tlr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tlr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Thiosp_00886 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tlr03019
]
Thiosp_00886 (pnp)
03016 Transfer RNA biogenesis [BR:
tlr03016
]
Thiosp_00886 (pnp)
Enzymes [BR:
tlr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Thiosp_00886 (pnp)
Messenger RNA biogenesis [BR:
tlr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Thiosp_00886 (pnp)
Transfer RNA biogenesis [BR:
tlr03016
]
Prokaryotic type
tRNA degradation factors
Thiosp_00886 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
PNPase
RNase_PH_C
KH_1
KH_2
KH-I_KHDC4-BBP
OB_RRP5_4th
RNase_II_C_S1
S1_RRP5
KH_KhpA-B
S1_2
Motif
Other DBs
NCBI-ProteinID:
WPL11158
LinkDB
All DBs
Position
975820..977928
Genome browser
AA seq
702 aa
AA seq
DB search
MTHITKTFQYGDQTVTLETGEIARQADGAVMVNMNDTVVLVTVVIDKRATVEKDFLPLTV
DYQEKTYAAGRIPGGFFRREGRPSEAEILTSRLIDRPIRPLFADGFGREVQVIATVKSLN
PAVNPEVPALIGASAALAISGAPFNGPIGAARVGYKNGEYLLNPAMIGLTPDSDLDLVVA
GTEQAVLMVESEARGLSEDVMLGAVLFGHEQMQVVINTIKELAAEVNKPPLEWTPAATDA
ELAQAVAAQAAAGLGEAYLIKDKMERYRALDRVRNAVYAELSGEDEKWPQALVYAALEKL
EKSIVRGRILRGEPRIDGRDTSTVRPISIRTGVLPRTHGSALFTRGETQALVVTTLGTER
DSQIIDALDGERREPFMLHYNFPPFCVGETGRVGSPKRREIGHGRLAKRGVMAAMPSIEE
FPYSVRVVSEITESNGSSSMASVCGTSLSLMDAGVPVKGSVAGVAMGLIKEQDEFAVLTD
IMGDEDHLGDMDFKVAGTAEGINALQMDIKIEGITREIMQQALAQAKDGRMHILGEMNKV
IDHHRSEMSEHAPRIIEFKIHPEKIRDVIGKGGSTIRAITEETGATIDINDDGVVKIFSV
QKSAGEEAKKRVRLITADVEVGKIYEGKVARLMDFGAFVTILPGRDGLVHISQICEERVQ
SVSDKLSEGDHVRVKVLEVDKQGRIRLSMKALSDEERAAPVA
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtgactcatatcaccaagactttccaatacggggatcagaccgtaacgctcgagaccggc
gagatcgcccgccaagccgatggcgcggtcatggtcaatatgaacgacaccgtggtcctg
gtcacggtggtgatcgacaaacgcgcgactgtcgaaaaagactttctgccgctgaccgtc
gattatcaggaaaaaacctatgccgccgggcgcatcccaggcggcttttttcgtcgtgaa
gggcgcccgagcgaggccgagattctcacttcgcgcctgatcgaccgccccatccgcccg
ctgttcgctgacggctttggccgtgaggtgcaggtcatcgccacggtcaagtcgctcaat
ccggcggtgaatccagaggttcccgcactcatcggcgcctccgctgcgctggccatctcg
ggcgcgcccttcaatgggcccatcggtgccgcgcgtgtcggctataagaatggggaatat
ctgctcaatcccgccatgattggcctgaccccagacagcgatctggatctggtggttgcc
ggtaccgaacaagccgtactgatggtggagtccgaggcgcgcggcctgtccgaggatgtc
atgctcggcgctgtgctctttggtcatgagcagatgcaggttgtcatcaataccatcaag
gaactcgcagccgaggtcaacaagccaccgctggagtggaccccggcggcgaccgatgcc
gaactggcgcaagcggttgcggcccaggccgccgctggtttgggcgaggcctatctcatc
aaggacaagatggaacgctatcgcgcgctcgatcgggtgcgcaatgcggtctacgccgag
ctttccggagaggatgaaaagtggccgcaagcgctggtctatgccgcgctcgagaagctc
gaaaaatccattgtgcgcgggcgtattctgcgcggcgagccgcgcatcgacggccgcgac
accagcaccgtgcgtcccatcagtattcgcaccggcgtgctgccgcgcacccacggctcg
gcgctctttactcgtggcgagacccaggcgttggtggtcaccacgctcggcactgagcgc
gattcgcagattatcgatgcccttgatggcgagcggcgcgagcccttcatgttgcactac
aacttcccgcccttctgcgtcggcgagaccggccgggtcggcagccccaagcggcgcgag
atcggccatggccgtctggccaagcgcggggtgatggccgccatgccgagcatcgaggaa
tttccctactcagtgcgggtggtctcggagattaccgagtccaacggttccagttccatg
gccagcgtctgcggcaccagtctgtccctgatggatgccggggtgccggtgaaaggctcg
gtggctggtgttgccatgggcttgatcaaagagcaggacgaatttgccgtgctgaccgac
atcatgggcgacgaggaccatctcggcgacatggacttcaaggtggccggaaccgccgag
gggattaacgccctgcagatggatatcaagatcgagggcatcacccgcgagatcatgcag
caggcgctggctcaggccaaagatggccggatgcacattctcggtgagatgaacaaggtc
atcgaccaccatcgctctgagatgtccgagcatgctccgcgcatcatcgagttcaaaatc
catccggaaaagatccgcgacgttattggtaagggtggctccaccatccgcgccatcacc
gaggaaaccggcgccaccatcgacatcaacgacgatggcgtggtcaaaatcttctcggtg
cagaagtccgctggcgaagaggcgaaaaagcgcgtccgcctgatcaccgctgatgtcgaa
gtcggcaagatctacgagggcaaggtcgcacgcctgatggacttcggcgcctttgtcacc
atcctgcccggacgcgatggtctggtacatatctcccagatttgcgaggagcgggtgcag
agcgttagcgacaagctctcagagggcgaccatgtgcgggtcaaggtgctggaggtcgat
aagcaaggccgcattcgtctcagcatgaaggcgctgagcgatgaggaacgcgccgctcca
gtcgcctag
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