Thiorhodovibrio litoralis: Thiosp_01158
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Entry
Thiosp_01158 CDS
T09560
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
tlr
Thiorhodovibrio litoralis
Brite
KEGG Orthology (KO) [BR:
tlr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tlr03009
]
Thiosp_01158 (rlmD)
Enzymes [BR:
tlr01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
Thiosp_01158 (rlmD)
Ribosome biogenesis [BR:
tlr03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
Thiosp_01158 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_25
Methyltransf_31
RrnaAD
Methyltransf_11
TRM5-TYW2_MTfase
Cons_hypoth95
MTS
PCMT
Methyltransf_15
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
WPL11423
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Position
1295008..1296387
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AA seq
459 aa
AA seq
DB search
MSKKKPLPQEPIEAEIGDLSHDGRGVAHVDGKAVFVQGALAGERVRFRLTRRQRRHDEGE
VVEVLSASPDRVTPRCAHFGLCGGCALQHLDPAAQIRMKQEVLAEALRRIGKVSPETWLP
PLVAEHWGYRRKARLGVRYVAKKGRVLVGFRERRSSFVADLERCEVLHPAVGERLTELAE
LIGSLSIRERVAQIEMAQGDGPVVLIFRVLEPPTPGDIELLHAFAARTGLHVYLQPGGIE
TVAPLPGQQVELSYALPAPDATPVVEPLPTPDINLVFGPNDFTQVNLELNRLMVARALER
LDPGPDDRVLDLFCGLGNFTLPIARRAAFVLGVEGDAGLVERARANAEGSGLDDSRVRFE
RADLYTEAAGEDPAAHWPWTRQAFDLALIDPPRSGALQVLDPLVATGIRRLVYVSCYPGT
LARDAGHLVEHHGFRLVAAGAMDMFPHTAHVESMAVFER
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaagaaaaaaccgcttccccaggagcccattgaggccgagattggcgacctgagt
cacgacggtcgcggtgtcgctcatgtcgacggcaaggccgtgtttgtgcaaggcgccctg
gccggcgaacgggtgcgctttcgactgacccgccgacagcggcgccatgacgagggcgag
gtggtcgaggtgctcagcgcatcgccagaccgggtcaccccgcgctgcgcgcatttcggg
ctttgcggcggctgcgccctgcagcatctcgacccggctgcgcaaatccgcatgaagcag
gaggtcctcgccgaggcgctgcggcgcatcggcaaggtctcgcccgaaacctggctgccg
ccgctggtggcggagcattggggctaccggcgcaaggcgcgacttggcgtgcgctatgtc
gccaaaaagggccgcgtactggtcggttttcgcgaacgccgctcgtccttcgtcgccgat
ctcgagcgctgcgaggtgttgcacccggcggtcggtgagcgcctgaccgaactcgccgag
ctgatcgggagcttaagcatccgcgagcgggttgcgcagatcgagatggcccagggcgac
ggcccggtggtgctgatctttcgcgtgctcgagccgccaacgccgggtgacatcgagctg
ctgcacgccttcgccgcccgaaccggtctgcatgtctatctccagccgggcggcatcgag
acggttgcgccgctgcccgggcagcaggtggagctgagctatgccttgccggcgccggat
gccacgccggtggtcgaacctttgccgacgccggatatcaacctggtgttcgggcccaat
gatttcactcaggtcaatctggagctaaaccgcctgatggtcgcgcgcgcgctcgagcgg
ctcgaccccggccccgatgatcgggtacttgacttgttttgtggtctgggcaatttcact
ctgcccatcgcgcgccgcgccgccttcgtgctcggggtcgagggcgatgcgggcctggtg
gagcgcgcccgcgccaatgccgaaggcagcgggcttgatgacagccgcgtgcgcttcgag
cgcgccgatctttacactgaagctgcgggcgaggaccccgctgcgcattggccctggacg
cggcaggccttcgacctcgcgctcatcgacccgccccgcagcggcgccctgcaggtactc
gacccgctggtcgcgaccggcattcgccgtctggtctatgtttcctgctatcccggcacc
ctcgcccgcgatgccggccatctggtcgagcaccacggctttcgcctggttgccgccggc
gccatggacatgttcccgcataccgcgcatgttgagtctatggcagtgttcgagcgctga
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