Thiorhodovibrio litoralis: Thiosp_01717
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Entry
Thiosp_01717 CDS
T09560
Symbol
rtcB_1
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tlr
Thiorhodovibrio litoralis
Brite
KEGG Orthology (KO) [BR:
tlr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tlr03016
]
Thiosp_01717 (rtcB_1)
Enzymes [BR:
tlr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Thiosp_01717 (rtcB_1)
Transfer RNA biogenesis [BR:
tlr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Thiosp_01717 (rtcB_1)
Prokaryotic type
tRNA splicing ligases
Thiosp_01717 (rtcB_1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
TetR_C_30
Motif
Other DBs
NCBI-ProteinID:
WPL11964
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All DBs
Position
1917232..1918428
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AA seq
398 aa
AA seq
DB search
MPIRKVFTEGAKPVKVWTDDIDARSQAQLVNISTLPFIHKHVAAMPDVHLGIGATIGSVI
ATDKAIIPAAVGVDIGCGMAAARTSLTAEQIDEKALKKLFDQISRDVPVGRAQHKDDRAL
TDAAAPFAAPLKAMTDKHPQLLKAFGRFSNWVNQIGTLGGGNHFIEVCLDESNRVWVMLH
SGSRGIGNAIGHYFIELARRDMERWMIQLPDRDLAYLPEGTEHFDDYVEAVSWAQSYARE
NRDQMMRLVLAALARHLPEFSVTEEVVNCHHNYVDRENHFGANVWVTRKGAIRAREGDLG
IIPGSMGAKSYIVRGKGNPESFCSCAHGAGRRMSRTAAEKQFKPADLVAQTQGVMCRKDK
GVLDEIPGAYKDIDQVMANQSDLVEVVHTLKQLVCVKG
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgcccattcggaaggtcttcactgagggcgccaagcccgtcaaggtctggaccgacgat
atcgatgcgcgctcacaagcacagctcgtcaatatctcgaccctgccgttcatccacaag
catgtcgccgccatgcctgacgtgcatctgggcattggcgctaccatcggcagcgtcatc
gcgaccgacaaggccattatcccggccgctgtcggtgtcgatatcggctgcggcatggcc
gccgcgcgcacctcgctgaccgccgagcagatcgacgagaaggcgctgaaaaagctcttc
gaccagatcagccgcgatgtcccggtcgggcgcgcgcagcacaaggacgaccgcgcgctg
accgacgccgccgcgcccttcgccgcgccgctcaaggcgatgaccgacaaacacccgcaa
ttgctcaaggcgttcgggcgcttctccaactgggtcaaccagatcggcaccctgggtggg
ggcaatcacttcatcgaggtctgtctggacgagtccaaccgcgtctgggtgatgctgcat
tctggcagtcgcgggattggcaacgccatcggccattacttcatcgagctggcccgccgc
gacatggagcgctggatgattcagctgccggaccgggacctggcctatctgcccgagggc
accgaacatttcgatgactatgtcgaggccgtgtcctgggcgcaatcctatgcgcgggag
aatcgcgatcagatgatgcgcctggttttagctgcacttgcgcggcatctgccggagttc
agcgtcaccgaggaagtggtcaactgccaccacaactatgtggatcgcgagaaccacttc
ggcgccaatgtctgggtcacccgcaagggcgccatccgcgcccgcgaaggtgatcttggc
atcatccccggcagcatgggcgcgaaaagttacatcgtgcgcggcaagggcaaccccgag
agcttctgctcctgcgcccacggcgcggggcggcggatgagccggaccgctgccgaaaag
cagttcaagccagccgacctggtcgcgcagacccagggtgtgatgtgtcgcaaggacaaa
ggggtgctcgatgaaatccctggcgcctacaaggacatcgaccaggtgatggccaaccag
agcgacctggtcgaggtggtgcataccttgaagcagctggtgtgcgtgaagggatga
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