Thiorhodovibrio litoralis: Thiosp_02216
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Entry
Thiosp_02216 CDS
T09560
Symbol
recD_3
Name
(GenBank) Exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
tlr
Thiorhodovibrio litoralis
Pathway
tlr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tlr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Thiosp_02216 (recD_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tlr03400
]
Thiosp_02216 (recD_3)
Enzymes [BR:
tlr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Thiosp_02216 (recD_3)
DNA repair and recombination proteins [BR:
tlr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Thiosp_02216 (recD_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
HHH_5
Viral_helicase1
AAA_11
HHH_2
NTPase_1
Helicase_RecD
PIF1
AAA_22
AAA_16
TrwB_AAD_bind
AAA_28
AAA_29
MeaB
AAA
nSTAND3
UvrD-helicase
RsgA_GTPase
ABC_tran
HHH
DEAD
SLFN-g3_helicase
TsaE
AAA_7
AAA_5
AAA_24
NPHP3_N
SRP54
AAA_17
Mg_chelatase
ATP_bind_1
Motif
Other DBs
NCBI-ProteinID:
WPL12450
LinkDB
All DBs
Position
complement(2441880..2444087)
Genome browser
AA seq
735 aa
AA seq
DB search
MTDAPAASYHANSQLETIAGPVERVTFHSPESGFCVLRVKVRGERELVTVIGNAAQVAPG
EHIDARGQWTIDARHGRQFKANELRVVPPGTREGIERYLGSGLVKGIGPHFAKRLVDAFG
ERVFDIIEQSPDRLRELPGIGKKRQERVTRAWAEQKVIREIMVFLQSHGVGTARAVRIFK
TYGEAAIERVRGNPYRLALDIRGIGFKTADQLAERLGIPRDSPLRARAGVRHVLQEIASD
GHCAAWREVLSAQSAKLLEIAPEGIEAAIDLELAAGQLVAETIEERTLVFLPALHRSECG
VAESLWRLRDGMPPWGLIDTECALPWVERQTGLHLAASQRQAVIQAVTGKCTLLTGGPGV
GKTTVVNSILRILRAKGVKATLCAPTGRAAKRLSESTGQEAKTIHRVLEFDPKTLDFKHN
ADNPLDTDLLVCDETSMVDVSLMHKLLSALPSSAALLLVGDVDQLPSVGPGAVLADAIGS
GVMPTVRLTEIFRQAQTSQIIVNAHRINAGQLPQVPNPPPSDSDWYVIRSETPEQIQERL
VKTLCERIPARFGLDPIRDVQVLTPMNRGGLGARALNVLLQQRLNPDAKPRIERFGWTFA
PGDKVIQNVNNYDKEVFNGDIGRILAIDVEESEVRIAFDERQVVYEFGELDELALAYATS
VHKAQGSEYPAVVIPLATQHYMLLQRNLLYTGVTRGKRLVVLIAQPKALGMAVRQTGGQR
LTRLRQRLVEASEAR
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgcgcccgcagcctcataccacgccaactcccagctcgagaccatcgccggc
cctgtcgagcgcgtcaccttccatagtcccgagagcggcttttgcgtcctgcgcgtgaaa
gtccgtggcgagcgcgagttggtcaccgtcatcggcaacgccgcccaagtcgctcccggc
gagcacatcgacgcgcgtgggcaatggacgattgatgcgcgccatggccggcagttcaag
gccaatgagttgcgcgtcgttccgcccggcacccgcgaaggcatcgagcgctatcttggt
tccgggctggtcaaaggcatcgggccgcatttcgccaagcggctggtcgatgcctttggc
gaacgcgtcttcgacatcatcgaacaatcccctgatcgcctgcgcgaactgcccggcatt
ggcaagaagcgccaggaacgggtcacccgcgcctgggccgagcagaaggtcatccgggag
attatggtgttcctccagtcccatggcgtcggcaccgctcgggcggtgcgcatcttcaag
acctatggtgaagcggccatcgagcgggtgcgcggcaatccctaccggctggcgctggat
attcgcggcattggctttaagaccgccgatcagctggctgagcgcttggggataccccgc
gactcaccgctgcgcgcccgcgccggtgtgcgccatgtcttgcaggagatcgccagcgat
ggccattgcgccgcttggcgcgaggtcctgtccgcacagtccgccaaactgttggagatc
gcccccgagggcatcgaagcggcgattgatctggaactggccgccgggcagttggtcgct
gaaaccattgaggaacgcaccctggtctttctccccgccctgcaccgcagtgaatgcggg
gtggcggaatccctatggcgcctgcgcgatgggatgccgccctgggggctgatcgacacc
gaatgcgccctgccctgggtggaacgtcagaccggtctccatctggccgcgtcccagcgc
caggcggtgatccaggctgtcaccggcaaatgcaccctcctgaccggcggtcccggcgtg
ggcaagaccacggtggtcaattccattctgcggattctgcgcgccaagggtgtcaaagcg
accctgtgcgcgccgaccggtcgcgcggccaagcggctgtcggaatccaccggccaggag
gccaaaacgattcaccgcgtgctggagttcgatcccaagacgctggacttcaagcacaat
gccgacaatccgctggacaccgatctgctggtctgcgacgagacctccatggtcgatgtc
agcctgatgcacaagttgctcagtgccctgccctcctcggccgcattgctcttggtcgga
gatgttgaccagttgccctcggtcggaccgggcgcggtgctggccgatgcgattggctcc
ggggttatgccgacggtgcgcctgacagagatcttccgccaggcacagacctcgcagatt
atcgtcaatgcccaccgcatcaatgccgggcagctgcctcaggtccccaacccaccgccg
agtgacagcgactggtatgtgatccgcagcgaaaccccggaacagatccaggagcgattg
gtgaaaaccctctgcgagcgcatccccgcgcgcttcgggctggacccgattcgcgatgtg
caagtgcttacccccatgaaccgcggcggactgggtgcgcgggcgctgaatgtgctgctg
cagcagcgcctcaaccccgacgcaaagccgcgcattgagcgcttcggctggaccttcgcc
ccgggcgataaggtgattcagaacgtcaataattatgacaaggaggtcttcaacggcgat
atcggccggattctggccatcgacgtcgaggaaagcgaggtgcgcatcgccttcgatgaa
cgccaggtggtctatgagttcggggagcttgatgagctggcgctggcctatgccaccagt
gtgcataaggcgcagggctcggagtatccggcggtggtcattcccctggcgacccagcat
tacatgctgttgcagcgcaatctgctctataccggggtaacccgcggcaagcggttggtg
gtgctgatcgcccaaccaaaggcgctgggcatggccgtcagacagaccggcgggcagcgg
ctgacgcggctgcggcagcggttggttgaagcgagcgaggcgcgttga
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