Thiorhodovibrio litoralis: Thiosp_02381
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Entry
Thiosp_02381 CDS
T09560
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tlr
Thiorhodovibrio litoralis
Pathway
tlr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tlr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Thiosp_02381 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tlr03019
]
Thiosp_02381 (rne)
03009 Ribosome biogenesis [BR:
tlr03009
]
Thiosp_02381 (rne)
Enzymes [BR:
tlr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Thiosp_02381 (rne)
Messenger RNA biogenesis [BR:
tlr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Thiosp_02381 (rne)
Ribosome biogenesis [BR:
tlr03009
]
Prokaryotic type
rRNA processing factors
Thiosp_02381 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WPL12607
LinkDB
All DBs
Position
complement(2627015..2630224)
Genome browser
AA seq
1069 aa
AA seq
DB search
MKRMLINATQPEELRVAIVDGQQLFNLDIESPGREQKKANIYKGTITRVEPSLEAAFVEY
GSERHGFLPLKEIARSYFANEGAKPGTKNNIRELIREGQEVVVQIDKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGVSRRIEGTDRSELREALSQLDIPEDTGLIVRTAGVGKNIEE
LQWDLDYLKQLWDAIETSSKERKAPFLIYQESDVIIRSIRDHLRADIGEIVVDDPKMFEK
AQVFVRSVMPHNLKKLRLYEDEVPLFTRYQIESQIESAFQREVRLPSGGSLVIDHGEALT
SIDINSSRATKGADIEETALNTNLEAADEVARQLRLRDLGGLFVIDFIDMTPARNQREVE
NRLRDALKQDRARVQISRISRFGLLEMSRQRLRPSLGESSQIVCPRCRGQGTIRGVESLG
LSVLRIVEEEAMKDSTSRILAHLPIPVATFLLNEKRRAVLAIEERHQVEVLLVPNKSIDT
PEYRIERIRSQDVVKSGADADVSYELAEDLSNEETLSQATTTRPADEPAVKQLAPSIPAP
HRSESAEPSRRHTGAAAATQERNENLLKRLWVTFFSAGHDETTQSKDVSAAKQAREEPAL
ASEDKPARSRPARRGSGGSRQSRGRSEADAVTDSESKATTAKTASDDRAASTRTDSGRDE
SGPTENGPSENSQSGDGQSQRSERSRSSRRGGRGRGRKSSTGQASAQDAAASSNADRGDE
TEAREHPKADRTPPDSSDRARPADQSGAANAGADPNASSGDNDQAGDGDARQSSGEGDAP
RSRSSRRRRGGRNRRKPGSQAATNGDAKPTEEASPASETAQAPARPPARSRPEQTDSASA
SAEDKSGKDSGKDSGSGSDKGTGTGSSGETASASSVSSHAPSSDTKDPRPAAQSAPGISD
AAARTASADDRDAPRSPPVEKPVAPASAEPAQSAPSAPQDPAPKPPQPAPTQLAPAKTEA
KADTPSTTQARSPKAPAEAPLSSKADSMQAPAETRPHPKADSPQAPPTSSGIRLTEAKAP
TERKIPDTETPRAAPSTSASATPAPAPDTAQHNTSEPARKQEQGGPGLG
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgatcaatgcaactcagcccgaagagttgcgtgtggccatcgtcgat
ggtcaacaactgttcaaccttgatattgaatcacccggccgcgagcagaaaaaagccaat
atttacaaagggaccatcacccgcgtcgagcccagtctggaggcggctttcgtcgaatat
ggcagcgagcgccatggctttttgccgctgaaggaaatcgcgcgcagctattttgctaac
gagggcgccaagcccggcaccaagaacaacatccgcgagctgatccgcgagggtcaggaa
gtggtggtgcaaatcgacaaggaagagcgcggcaacaaaggcgcggctctgaccaccttc
atctccctagccggccgctatctggtgttgatgcccaacaatccgcgcgccggcggcgtc
tcgcgccgcatcgagggcacggatcgcagcgagctgcgcgaggcgctgagtcagctcgac
atccccgaggacacggggctgatcgtgcgcactgccggcgtcggcaagaacatcgaggaa
ctgcagtgggacctcgattacctcaagcagctgtgggacgccattgagacctcgagtaaa
gagcgcaaggcgcccttcctgatctaccaggaaagcgacgtcatcatccgctccatccgc
gaccatctgcgcgccgacatcggcgagattgtggtcgatgacccgaagatgttcgaaaag
gcccaggtcttcgtgcgctcagtcatgccgcataacctgaagaagctgcgcctctatgag
gacgaagtcccgctgtttacccgctaccagatcgaaagccagatcgaatccgcctttcag
cgcgaggtgcgcctgccctcgggcggctcgctggtcatcgaccatggcgaagccctcacc
tccatcgacatcaactcgtcgcgcgccaccaagggcgccgatatcgaggaaacggccctc
aacacgaacctggaggctgcggacgaagtcgcccgccagctgcgcctgcgcgatctcggc
gggctcttcgtgatcgacttcatcgacatgaccccggcccgcaaccagcgcgaggtcgag
aaccgcctgcgcgacgcgctcaagcaggaccgcgcccgcgtgcagatctcgcgcatctcg
cgctttggcctgctggagatgtcacgccagcgcctgcgcccctcgctgggcgagtcgagc
caaatcgtgtgtccgcgctgccgcggccagggcaccatccgcggcgtcgaatccctaggc
ctctcggtgctgcgcatcgttgaagaagaagcgatgaaggacagcacctcgcgcatcctc
gcgcatctgccgattccggtcgcgacctttctgctcaatgaaaagcgccgggcggtgctg
gcgatcgaagagcgccaccaggtcgaagtcctgttggtcccgaacaaaagcatcgacacc
cctgaataccgcattgagcgcattcgcagccaggacgtcgtcaaatccggcgccgatgcc
gatgtcagctatgagctggccgaagatctctccaacgaagagactctatcgcaagccacc
accacgcgacccgcggacgaacccgccgtcaagcagctcgcgccctcgataccggcgccg
caccgcagcgagagcgcagagcccagccgacgccacacgggcgccgccgcagccacccag
gagcgcaatgaaaacttgctcaagcgcctgtgggtcaccttcttctccgccgggcacgat
gagacaacgcagtccaaggatgtgtccgccgccaagcaagcgcgcgaggaacccgccctg
gccagcgaggacaagcctgcccgcagccgcccagcccggcgcggctctggcggttcgcga
caaagccgtggcaggagcgaagcagacgctgtcaccgactccgagagcaaggcgacaacg
gccaagaccgcgtcagatgaccgcgccgccagcacgcgaaccgacagcgggcgcgatgaa
agtggacccacggaaaatggacccagcgaaaattcgcaaagcggtgacggccaatcccaa
cgcagcgagcgctcgcgctccagtcgccgtggcgggcgcggacgtggaagaaaatcctcg
accggtcaggccagcgctcaggatgccgcagcttcatccaacgcagatcgcggcgacgaa
accgaggcaagggagcaccccaaagccgatcgaactccgcctgactcgagtgaccgcgcc
agaccggcagatcaatccggtgccgcaaacgccggagctgatccgaacgcgagctccggt
gacaacgaccaggctggcgatggcgatgcacgtcaaagcagcggcgagggcgatgcgccc
cgttcgcgctccagccgccgcagacggggcggtcgcaacagacgcaagcccggctcccag
gcggctaccaatggcgatgccaagccgaccgaggaggctagcccagcgagcgaaactgcg
caggcaccagcacgccccccagcacggtcccggccggaacagacagacagcgcgagcgcc
tcagcggaggacaaatccggtaaagattccggtaaggattctggctcgggctccgacaaa
ggcactggcacgggttccagcggcgaaactgcgtcggccagctcagtttcgtcgcacgcg
ccctcttctgacacaaaggacccgcgccccgcagcgcagtcagcacctggcatttctgat
gctgccgcgcgcactgcttcggccgacgaccgggatgctccgcgcagcccgcctgtagaa
aagcctgttgcgcccgccagcgctgaacctgcgcagtcagcgccatcagcaccgcaagat
ccggcccctaagcctccgcaaccagcgccaacgcaactagcgccagccaaaaccgaggcg
aaggcagacacgccatcgaccacgcaggcgcgcagcccgaaagcacctgcagaggctccg
ctatcctcgaaagcagacagcatgcaagcgccggcagaaactcggccacatccaaaagcg
gacagcccgcaagcgccgccaacatcatcgggaatccggctaacggaagcgaaagcaccc
acggagcgcaaaatcccggataccgagacgccgagagccgcgccatcgacgtcagcatcg
gcaacacctgcgccagcacccgatacggcgcagcacaacaccagcgagccggcccgaaaa
caggagcaaggcggcccgggcctcggctga
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