Thiorhodovibrio litoralis: Thiosp_03398
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Entry
Thiosp_03398 CDS
T09560
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
tlr
Thiorhodovibrio litoralis
Pathway
tlr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tlr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Thiosp_03398 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tlr03021
]
Thiosp_03398 (rpoA)
03400 DNA repair and recombination proteins [BR:
tlr03400
]
Thiosp_03398 (rpoA)
Enzymes [BR:
tlr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Thiosp_03398 (rpoA)
Transcription machinery [BR:
tlr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Thiosp_03398 (rpoA)
DNA repair and recombination proteins [BR:
tlr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Thiosp_03398 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
WPL13591
LinkDB
All DBs
Position
complement(3719574..3720587)
Genome browser
AA seq
337 aa
AA seq
DB search
MSDVASGFLKPRIVTVDAVDGSRRHAKVSLEPLERGFGHTLGNALRRILLSSMDGYAVTE
VEIQGILHEYSTIEGVQEDVLEILLNLKQLALSLQGRDEATFTLSKKGPGTVTAADIALD
HGAELANPELEIAHLTDNTELSMTLTVRRGRGYEPASVREMESGEDRPIGKLPLDASYSP
IARVAIEVQSARVEQRTDLDRLVIDIETNGTIEPKEAIERAALILRDQLSFFVELEDSGV
GDESDQEVTEEVGIDPMLVRPVDELELTVRSANCLKAENIYLIGDLIQRTEVELLKTPNL
GKKSLTEIKDVLATRGLSLGMRLERWPPDNVEELMVK
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatgttgccagtgggttcctgaaaccgcgcatcgtcaccgtcgatgcggttgat
ggtagccggcgtcacgcgaaagtttctcttgagccgcttgaacgtgggttcggccatacg
cttggcaatgcgctgcggcgtatcctgctgtcttccatggacggctacgcggtgacagag
gtcgagattcaggggattttgcacgagtattcgaccattgagggggtgcaggaagatgtc
ctcgagattctgcttaacctcaagcagcttgccctctcgctgcaaggtcgtgacgaggcg
actttcacgctcagcaagaagggtcccggcacggtcacggcggcggatatcgcgcttgat
cacggtgcggaactggccaacccggagcttgagatcgcgcatctgaccgacaacaccgag
ctcagcatgacgctcacggtgcggcgcggtcgcggctacgagcctgcaagcgtgcgcgaa
atggagagtggggaagatcggccgatcggcaagctacccttggatgcgtcatacagcccc
attgcccgcgttgcaattgaagtccagtctgcgcgtgtcgagcagcgcaccgaccttgat
cgtttggtcatcgacatcgagaccaatggcaccattgagccgaaagaagcgattgagcgc
gcggccctgatcctgcgcgaccagttgtctttcttcgtggagcttgaagactctggcgtt
ggcgacgaaagcgatcaggaagtcaccgaagaagtcggtatcgacccgatgctggtgcgc
ccggtcgacgagctcgagctcacagtgcgctcggccaactgtctgaaggccgaaaacatc
tatctgattggcgatctgatccagcgcaccgaggtggagctgctaaagacgcccaatctt
ggcaagaagtccctgactgaaatcaaggatgttcttgccacccgcgggctgtcgctcggc
atgcgccttgagcgctggccgccggacaatgtcgaagaattaatggttaagtaa
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