Thiorhodovibrio litoralis: Thiosp_03429
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Entry
Thiosp_03429 CDS
T09560
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tlr
Thiorhodovibrio litoralis
Pathway
tlr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tlr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Thiosp_03429 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tlr03021
]
Thiosp_03429 (rpoC)
03400 DNA repair and recombination proteins [BR:
tlr03400
]
Thiosp_03429 (rpoC)
Enzymes [BR:
tlr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Thiosp_03429 (rpoC)
Transcription machinery [BR:
tlr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Thiosp_03429 (rpoC)
DNA repair and recombination proteins [BR:
tlr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Thiosp_03429 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
WPL13622
LinkDB
All DBs
Position
complement(3739572..3743789)
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLRIIKQQGQALEFDAIKIGLASPDMIRSWSYGEVKKPETINYRTFKPEREGLFCAK
IFGPVSDYECLCGKYKRLKHRGVVCEKCGVEVTLAKVRRERMGHIDLASPTAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESFVVIDPGMTELTRHQLLTDEQYLEALEANGDEFDARM
GAEAVYELLRTIDLDAEVQLMREEMDSTNSETKIKKLTKRLKLIESLKASGNRPEWMILT
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLIAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFSKLQLRGLAATIKAAKKMVERGTPEVWDILEEVIRQHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMASNNILSPANGEPIIVPSQDVVLGLYYMTREGINAQGEGLCLSGLVEARRAYETG
MADLHARVKVRIREVHREVDGSSKEIISVQETTVGRALVWEIVPEGLPFELVNQNLGKKQ
ISRLINRCYRVLGLKDTVVFADQIMYLGFRMATRAGVSIGLEDMEVPDEKPEILAAAETQ
VKEIEDQYASGLVTNGERYNKVVDIWSHTNEQVAKSMMRKLGKDKVKDAEGNETEQDSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVIQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDMVVLEDDCGTEKGLSMTPIIEGGDVVEPLRERIL
GRVTAADVLMPGSDDVLCESGTLLDEGWVERLEIEGVDQVQVRSPITCEARIGVCAQCYG
RDLARGHRVNRGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVSAVQVKSSGSVRL
HNIKTVEHHSGNLVAVSRSGELTVLDAKGLEKERYKIPYGATVRVNDGDAVEGGQTVATW
DPHTHPVVTEVAGRLRFEDFNDDTVQSQVDEQTGLTSMVVIDPKQRPTAGKDLRPMVMLL
GENGEELKIAGTDLPARYYLPSGAIVNVTDGADVAVGDILARIPQESSKTRDITGGLPRV
ADLFEARKPKDQALMAQATGTVSFGKDTKGKQRLVITTDDGETVEELIPKWRHVNVFEGE
RVEKGEVISEGELNSHDILRLKGVTALAEYLVKEIQDVYRLQGVRINDKHIEVIVRQMLR
KVNILNAGDTRLLRGEQVDYSTVAAENARVEEEGKHPALWEPLLLGITKASLATESFISA
ASFQETTRVLTEAAVRGSNDSLTGLKENVIVGRLIPAGTGLAYHTERRRKRAIDMSGLSE
EERAEGVNDELEQRLKEELNASAGE
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagatctactgagaatcatcaagcagcaggggcaggcactggagttcgacgcgatc
aagatcggtctggcgtcgcccgacatgatccgctcctggtcctacggcgaggtcaagaag
cccgagaccatcaactaccggaccttcaaacccgagcgcgaggggctgttctgcgccaag
atcttcgggccggtcagcgactatgagtgcctgtgcggtaagtataagcgcctgaaacac
cgcggcgtggtgtgcgagaagtgtggcgtcgaggtcacgctcgccaaggttcggcgcgag
cgcatggggcacatcgacctggccagcccgacggcgcacatctggttcctcaagtccttg
ccctcgcgcattggcctgctgctcgatatgaccctgcgcgacatcgagcgggtgctctac
ttcgagtccttcgtggtcatcgacccgggcatgaccgagctcacgcgccaccaactgctg
accgatgagcagtatctggaagcactcgaggccaacggtgacgagtttgacgcgcgcatg
ggtgccgaggccgtctacgaactgctgcgcaccatcgacctcgatgccgaggtgcagctc
atgcgcgaggagatggactcgaccaactccgagaccaaaatcaagaagctgaccaagcgc
ctgaagctgatcgaatcgctcaaggcctccggcaatcgtcccgagtggatgattctgacc
gtgctgccggtgttgccgccggagctgcgcccgctggtgccgcttgatggcggacgcttt
gcgacttctgatctgaacgatctctatcgccgcgtcatcaaccgcaacaaccgcttgaag
cgcctgctcgatctgatcgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gagtcagtcgacgcgctgcttgataacggccggcgcgggcgagccatcactggcaccaac
aagcgcccgctcaagtcattggcggacatgatcaagggcaaacagggacgttttcgtcag
aacctgcttggcaagcgcgtcgactattccggccgctcggttatcgtggttggtccgacg
cttaagctgcatcagtgcggtctgcccaagctgatggcgctggagctgttcaagcccttt
atcttcagtaagctgcagctgcgcggtctggccgcgaccatcaaggccgccaaaaaaatg
gtcgagcgcggcacgccggaggtgtgggacatcctcgaagaggtcatccgccagcatccg
gtcatgctcaaccgcgcgccgacccttcaccgcttgggcatccaggcgttcgagccggtg
ctgatcgagggcaaggcgattcagctccatccgctggtctgtaccgcgtttaatgccgac
ttcgacggcgaccagatggccgtgcatgtgccgctctcgcttgaggcgcagcttgaggca
cgggcgctgatgatggcgtcgaacaacattctctcgccggccaatggcgagcccatcatc
gtgccctcacaggacgtggtgctcgggctctattacatgacccgcgagggcatcaatgct
cagggtgaggggctgtgcctgtccgggctggtcgaggcaagacgcgcctatgagaccgga
atggcagacctgcatgcgcgggtgaaggtacgcattcgcgaggtccaccgcgaggtcgac
ggcagctcgaaagaaatcatcagtgtgcaggaaaccaccgtcggccgcgcgctggtgtgg
gagatcgtgcctgaggggctgcccttcgagttggttaaccagaatctcggcaagaagcaa
atctcgcgcctgatcaaccgttgctatcgcgtgctagggcttaaggacactgtcgtcttc
gctgaccagatcatgtacctcggcttccgcatggccacccgcgccggtgtgtccatcggc
cttgaggacatggaggtgccggatgaaaagccggaaatcctcgcggccgccgagacacag
gtgaaggagatcgaggatcaatacgcctcgggtctggtcaccaacggcgagcgctataac
aaggtggtcgacatctggtcgcataccaacgagcaggtcgccaagtccatgatgcgcaag
ctcggtaaggacaaggtcaaggatgccgagggcaacgagaccgagcaggattcttttaat
tccatttacatgatggccgactccggagcgcgtggctcggcggcacagatccgccagctt
gccggcatgcgcgggctgatggccaagccggacggctccatcatcgaaacgcccatcacc
gcgaacttccgcgaagggctgaacgtcattcagtacttcatctccacccatggcgcgcgc
aagggtctcgccgatactgcgctcaagactgctaactccggctatctgacccggcgtctg
gtcgatgtcgcccaggatatggtggtgctcgaagatgactgcggcaccgagaagggcctt
agcatgacgcccatcattgagggcggtgatgtggtcgagccgctgcgcgagcgcattctc
gggcgtgtgaccgcggccgatgtactcatgcccggcagcgacgatgtgctgtgcgagtct
ggcactctgcttgacgaaggctgggttgaacggcttgagatcgaaggcgtcgatcaggtg
caggtgcgctcgcccatcacctgcgaggcgcgcattggtgtctgcgctcagtgctatggt
cgcgatctggcccgcggtcaccgcgtcaatcggggtgaggcggtgggcgttatcgctgcc
cagtcgatcggcgagcctggcacccagctgaccatgcgtaccttccacattggtggtgcc
gcatcgcgcgcggcagccgtcagtgcggtgcaggtcaagtcatccggttcggtgcgcctg
cataacatcaagacagtcgagcatcacagcggcaacctggtggccgtgtcgcgttctggc
gagctgacagtgctcgatgccaaagggcttgagaaggaacgctacaagattccctatggc
gcgaccgtgcgcgtcaatgatggcgatgcggttgagggcggtcagacggtggcgacatgg
gacccccatacccacccggtggtcaccgaggtggccgggcgtttgagattcgaagacttc
aacgacgacaccgtgcagtcgcaggtcgacgagcagaccgggctgacctcaatggttgtt
atcgaccccaagcagcgcccgaccgccggcaaggatctgcggcccatggtcatgctgctc
ggcgagaacggcgaggagctgaagattgctggcaccgatctgcccgcgcgttactatctg
ccttccggagccatcgttaacgtaaccgacggcgcggatgtcgcggttggcgacattctt
gcgcgtattccgcaggagtcctccaagacccgcgacatcacaggcggtctgccgcgggtg
gcggatctgttcgaggcgcgcaagcccaaggatcaggcgctcatggcccaggcgacgggt
accgtcagcttcggcaaggacactaagggcaaacagcgcctggtcatcaccacagacgat
ggcgagacggttgaggagctcattcccaaatggcgccatgtcaatgtgttcgagggcgag
cgcgtcgagaagggcgaggttatctccgaaggtgagctgaactcacacgacatcctgcgc
ctgaaaggcgtgaccgcgctggcggaatatctggttaaggaaatccaggacgtctaccgc
ctgcagggcgtgcgcattaacgacaagcacatcgaggtgatcgtgcgtcagatgctgcgc
aaggtgaatattctcaatgccggtgatacccgcctgctgcgcggcgagcaggtcgactat
tccaccgtggcggcggagaatgcccgggtcgaggaagagggcaagcatccggcgctgtgg
gagcctctgttgctcggcatcaccaaggcatcgcttgcgactgagtccttcatctcggct
gcttccttccaggagaccacccgcgtgctgaccgaggccgccgtgcgcggctcaaacgac
agcctgacgggcttgaaggaaaacgtcatcgtcggtcgcctgattccggccggtaccggg
cttgcctatcacaccgagcggcggcgcaagcgtgccatcgacatgtctggtttgagtgag
gaggaacgcgctgagggcgtgaacgacgagctcgaacaacggctgaaggaagaactgaat
gcctcggctggggagtag
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integrated database retrieval system
