KEGG   Thiorhodovibrio litoralis: Thiosp_03479
Entry
Thiosp_03479      CDS       T09560                                 
Symbol
ygcB_2
Name
(GenBank) CRISPR-associated endonuclease/helicase Cas3
  KO
K07012  CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
Organism
tlr  Thiorhodovibrio litoralis
Brite
KEGG Orthology (KO) [BR:tlr00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:tlr02048]
    Thiosp_03479 (ygcB_2)
Enzymes [BR:tlr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Thiosp_03479 (ygcB_2)
Prokaryotic defense system [BR:tlr02048]
 CRISPR-Cas system
  Type I CRISPR-Cas system
   Type I signiture cas proteins
    Thiosp_03479 (ygcB_2)
SSDB
Motif
Pfam: Cas3_HD Cas3-like_C_2 DEAD AAA_19
Other DBs
NCBI-ProteinID: WPL13664
LinkDB
Position
3790173..3792797
AA seq 874 aa
MNTDLQCAAFGKLERDSDGRILAWHPLIDHLIDVASCFMRLCQCRCIRRALERTAGRCLS
AQDLERLTVLVFLHDLGKANSGFQAKRWLNGQAPKEWPYPAGHGLEAMRLFEDDSFLRPL
VARLPIDAICTWGEAVEPLLKASISHHGRPIIENSADWARAIWKPVINSNGQTAYDPAAA
LEQIGKGASERFPDAFAPGGEPFPTAPAFGHLFAGLVQLADWLGSDTKFFPFSIIGEDRA
ETAPDYADRAILSLGMDAKAPRSALSMASPAPCFEQTFGNLPYPIQAAMDNPDLGSFVIL
ESETGSGKTEAALWRFVHLFERGEVDSLYFALPTRVSASQVYERIRQAVARLWPTDPPLT
VRALPGYASADGQEPRSLPNFKVLWPDDAADEVAHRRWAAESPKRFLAAPLAVGTIDQAL
FGALQVRHAHLRHALLARSLLVVDEVHASDPYMTVLLERLLQAHLGCGGHSLLLSATLGS
SARARYLAIGQASQTGFPTFEAACKAPYPALSDHLAMRDIVSTMRPKTVAWSLRDLIDEP
EAIAQLAVDAASTGAKVLIIRNTVPAALAVFQALEQQIPDPAWLFDVSGIRTLHHSRFSR
QDRPALDAAIQAQLGKDRPPGPLIVLGTQTLEQSLDLDADLLITDLCPIDVLLQRIGRLH
RHPRPEQQRPEAYRSPQAWVLTPPDHDLSPLLKASRHGLGPFRDGDGIYPDLRTIEATRR
LIDERPSITIPENNRELVEAATHPERLNAVETLGEAWQQLGQKIEGQTGAQRTIAHLHGL
EIDTPFDEQAGFPTDLDIATRLGVRDRLLIFDPAPTGPFGQPLQQLPVRHFLVPKGIDPD
AQPSAVEAQDGAILFSLESACFRYSRLGLEKIDG
NT seq 2625 nt   +upstreamnt  +downstreamnt
atgaacacggatttgcagtgcgcagcgttcggtaagctggagcgggattctgacggcagg
attctggcttggcatccgctgattgatcaccttattgatgtagcgtcctgtttcatgcgc
ttgtgtcagtgtcggtgcattcgtcgcgctctggagcgcacagcggggcgttgcttaagt
gcacaggatcttgaacggctgacagtgctagtgtttctgcacgatctgggcaaggccaac
agtggttttcaggccaagcgctggctgaatggccaggcaccaaaagaatggccgtaccct
gccgggcatggtctggaagcaatgcggttgtttgaggatgactcgtttcttcggccattg
gtggcacggttgcccattgatgcgatctgtacctggggcgaggccgtcgaaccgctcctg
aaagccagcatcagtcatcacggtcgcccgatcattgagaacagcgcggattgggcgcgg
gcgatctggaagcctgtcatcaattcaaacggacaaacggcttacgatccagccgcagcg
ctcgaacagatcggcaaaggagcgagcgaacgattccccgacgccttcgcgcctggtggt
gaaccgttcccaactgcgccagccttcggccatctgtttgccggtctggtgcaactagcc
gattggctcggctcggacaccaagtttttccccttctccattatcggcgaagatcgagcc
gagacggcacccgattatgcagatcgcgcgatcttgtcgcttgggatggacgccaaagcg
cctcgctcggcgctatcgatggcatcgccggcaccgtgcttcgagcaaacctttggcaat
ctgccctatccgatccaagccgcgatggataatccggatctgggatcttttgtgattctg
gaatcggaaaccggcagcggaaaaacggaagcggcgctatggcgtttcgtgcatctgttc
gagcgcggcgaggtcgatagcctctatttcgcgctcccgacccgcgtctccgcgagccag
gtgtatgagcgtattcgccaagcggttgcccggctctggccgaccgatccgccactcacc
gtccgcgcattgccgggttatgccagtgccgatggtcaggagccaaggtcactcccgaat
ttcaaggtgctctggccggatgacgccgcagacgaagtggcgcatcgacgctgggctgct
gaatcgcccaagcgttttctggccgcaccactggccgttggcaccatcgatcaggccctg
ttcggtgctttacaggtgcgccacgcccatctgcgccatgccctgctagcccgcagtctg
ttggtggtcgatgaggtgcatgcgtccgatccctacatgacggtactcctggaacgcctg
ttacaagcgcacctcggctgtggtggtcattcgctgctgctgtcggccacgctcggctcc
agcgcacgagcacgctacctggcgattggtcaggcgtcgcaaacaggattcccgactttt
gaggcagcatgcaaggcaccctatccagcgctctccgatcaccttgccatgcgcgacatt
gtttcgacgatgcgccccaagaccgtcgcttggtcgctgcgcgatctgatcgacgaacct
gaagccattgctcagttggcggtcgatgccgcatcgaccggtgccaaagtgctgatcatc
cgcaacaccgttccagccgcgcttgctgtctttcaggcattggagcaacagattcccgat
ccagcctggctgttcgatgtgagcggaatcagaacgctgcaccacagccgcttcagccgc
caggatcgcccagcactggatgccgcaattcaagcacagctcggcaaggatcgcccgcct
ggtcccctgatcgtcctcggcacccagacgttggaacagagcttggatctggatgccgat
ttgctcatcaccgacctttgccccatcgacgtgttgttgcagcgcatcggtcgtttgcac
cgccatccgcgtcctgaacagcagcgccccgaggcgtaccgctccccccaggcctgggtg
ctcacaccaccagatcatgacctctccccgctgctgaaggcctcccgccatggattggga
ccgtttcgcgatggtgatggcatctatcccgatctgcgcaccatcgaggctacgcgccgg
ctgatcgacgaacgcccaagcatcacgatccccgagaacaaccgggaacttgtcgaggcc
gctacgcatcccgagcggctgaacgcggtagaaacactcggcgaggcgtggcaacaactc
ggccagaagatcgaggggcaaacaggtgcccagcgcaccatcgcccatttgcacggcttg
gaaatcgacaccccgttcgacgagcaagcgggctttccgaccgatctcgatatcgccacc
cgcttaggtgtgcgtgatcgtctcctgatcttcgaccccgcaccgaccggcccctttggt
caaccgctgcaacaattgcccgtccggcatttcctggtacccaaggggatcgatcccgac
gcccaaccgtcagcggtggaagctcaagacggcgcaatcctgttcagcctggagtccgcc
tgctttcgctatagccgcctgggactggagaagatcgacggctaa

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