Thiorhodovibrio litoralis: Thiosp_03547
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Entry
Thiosp_03547 CDS
T09560
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
tlr
Thiorhodovibrio litoralis
Pathway
tlr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tlr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Thiosp_03547 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tlr03021
]
Thiosp_03547 (rho)
03019 Messenger RNA biogenesis [BR:
tlr03019
]
Thiosp_03547 (rho)
Transcription machinery [BR:
tlr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Thiosp_03547 (rho)
Messenger RNA biogenesis [BR:
tlr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Thiosp_03547 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
S1CSD-TOTE-2
AAA
AAA_22
AAA_25
Motif
Other DBs
NCBI-ProteinID:
WPL13730
LinkDB
All DBs
Position
complement(3870899..3872155)
Genome browser
AA seq
418 aa
AA seq
DB search
MNLTELKKMPIPGLVELAQSMEIEGVGRSRKQDLIFSILKVQAKRGEDISGDGVLEILQD
GFGFLRSDDASYLAGPDDIYVSPSQIRRFALRTGDTISGKIRPPKDGERYFALLKVSEIN
FDRPEVAKNKILFENFTPLFPQKRLGLEIGNGSTEDITARIIDLVAPIGRGQRGLIVSPP
KAGKTMMLQNIAQSIGHNHPDCDLIVLLIDERPEEVTEMARSVRGEVISSTFDEPATRHV
QVAEMVIEKAKRLVEHNRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNVEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMEIHLDRRIAEKRIFPAIHI
NRSGTRREELLMAQAELQKMWILRKILHPMDELAAMEFLVDKLKNTKTNGEFFDSMRG
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcaccgaactgaagaaaatgcccatcccgggcttggtcgaactggcacagtcc
atggagatcgaaggggttgggcgctcgcgcaagcaagacctgattttttccatcctcaag
gtgcaggccaagcgcggagaggatatctctggcgacggcgtgctggagattctccaggac
ggtttcggctttctgcgctccgacgatgcgtcctatctcgccggaccggatgatatttac
gtctcgccaagccagattcgtcgttttgcgctgcgcaccggggataccatctcaggcaag
attcgcccgcccaaggatggcgagcgctatttcgcgctgctcaaggtcagtgagattaat
ttcgaccgacccgaggtcgccaagaacaaaatcctgttcgagaacttcacgccgctcttc
ccgcagaagcggctcgggttggagatcggcaatggcagcaccgaggacatcaccgcgcgc
atcatcgatctggtcgcacccatcggtcgtggccaacgtggcctgatcgtctccccgccg
aaagcgggtaagaccatgatgctgcagaacatcgcccagtcgatcgggcacaatcatccc
gactgcgacctgatcgtgctgctgattgacgagcggccagaggaagtcaccgaaatggcc
cgctcggtgcgcggcgaggtgatttcctccaccttcgatgagccggcgactcgccatgtg
caggtcgccgaaatggtcatcgagaaggccaaacgcctggttgagcacaaccgcgatgtg
gtcattctgctcgactccattacccgcttagcgcgcgcctacaacaccgtggtgccatcc
tcgggcaaggtgctgaccggtggtgtggatgccaatgcgctgcagcggcccaagcgcttt
tttggtgctgcgcgtaatgtggaggagggcggcagcctgaccatcctcgccaccgccttg
gtcgacaccggttcgcgcatggacgatgtgatctacgaggagttcaagggcaccggtaac
atggaaatccacctcgaccggcgcatcgctgagaagcgcatcttcccggcaattcacatc
aatcgctccggcacccgtcgcgaggagctgctgatggcccaggccgagctgcagaagatg
tggattctgcgcaagatcctgcatccgatggatgaactggcagccatggaattcctggtc
gacaagctcaagaacaccaagaccaatggtgagttcttcgattccatgcgcggctga
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