Thiorhodovibrio litoralis: Thiosp_03549
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Entry
Thiosp_03549 CDS
T09560
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
tlr
Thiorhodovibrio litoralis
Pathway
tlr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tlr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Thiosp_03549 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tlr03019
]
Thiosp_03549 (rhlB)
Enzymes [BR:
tlr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Thiosp_03549 (rhlB)
Messenger RNA biogenesis [BR:
tlr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Thiosp_03549 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WPL13732
LinkDB
All DBs
Position
3873156..3874640
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AA seq
494 aa
AA seq
DB search
MSETHLTETRFDSFALDSRILAGLQDAGFQHCTPIQAQALPIALTGRDVAGQAQTGTGKT
AAYLVAALHHLLRDAPDSGQRPEPGPRVLILAPTRELAVQIHKDAEVLAKHTGFRLGLAY
GGTGYQQQRDEIAAGVDILIGTPGRLIDYLKQRVFDLKSISVVILDEADRMFDLGFIKDI
RFLLRRMPPPEERLGMLFSATLSYRVTELAYEHMNDPLMVEITPDKVTADRVTQCCYMVG
NDEKIPLLIGLLRRIDDGRVMVFINTKRQAELVWGYLEGNGIESAVLSGDVPQKQRLRLL
RHFQEGKLPVLVATDVAARGLHIPDVSHVVNYDLPEDAEDYVHRIGRTARAGAAGDAISF
ACETYAFCLPEIEDYIGAKIPVEAVNAELLAEIDPSSRVRPPRRETRDRDGKDGRRHGGH
GHKHKHDSTHKHESKHRHESKHKDESEHKHPHKAEGKAETDAGEKPKKRRRRRSKPKSDR
PPQGDGSTSPTAAS
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaacccatctgaccgagacccgattcgacagcttcgcgctcgactcgcgcatt
ctcgccgggctgcaggatgccggattccagcattgcacgccgattcaggcccaggcactc
cccatcgcgctgactggccgcgatgtcgccgggcaggcgcaaaccggaaccggcaagacc
gccgcctatcttgtcgccgcgctgcatcatttgctgcgcgatgccccggattcgggccag
cgccccgaaccgggcccgcgggttctgattctggcccccacgcgcgagctcgcggtgcag
attcacaaggatgccgaggtgctggccaagcataccggttttcgcctaggccttgcctac
ggcggcaccggctatcagcagcagcgcgacgaaatcgccgccggggtggacatcctgatc
ggcacacccgggcggctgatcgactacttaaagcagcgggtgttcgatctcaaatccatc
tcggtggtgatcctcgatgaggccgaccgcatgttcgatctcggctttatcaaggacatc
cgcttcctgctgcggcgcatgccaccgccggaagagcgtctcggcatgctgttctccgcc
accctgtcctaccgggtcaccgagctcgcctacgagcacatgaacgacccgctgatggtc
gagatcaccccggacaaggtgaccgccgatcgcgtcactcagtgctgctacatggtcggc
aatgatgaaaaaatcccgctgctgatcggcttgctgcgccgaatcgacgacgggcgtgtg
atggtcttcatcaacaccaaacgccaggccgaactggtgtggggctatctggaaggcaat
ggcatcgagtccgcagtgctctccggtgatgtgccgcaaaaacagcgcctgcgcctgctg
cgccatttccaggagggcaaactgccggtattggtggccaccgacgtggccgcgcgcggg
ctgcacattccggatgtcagccacgtggtcaactacgatctaccggaagacgcggaagat
tacgtccaccgcatcgggcgcaccgcgcgcgccggcgcggcaggcgatgcgatcagcttt
gcctgcgagacctacgccttttgcctgccagagatcgaggactacatcggcgcgaaaatt
cctgttgaagcagtgaatgctgagttgcttgccgagatcgatccctcaagccgggtgcgc
ccgccgcggcgcgagacgcgcgacagggatggcaaggacggacgtcggcatggggggcat
ggtcataagcacaagcacgactcaacgcataagcacgagtcaaagcacaggcacgagtcc
aagcataaggacgagtctgagcacaagcatccgcacaaggcggaaggaaaagccgagaca
gacgcgggggagaagccgaaaaagcgcagacggcggcgttccaagcctaagtcggaccga
ccaccgcagggcgacggttcaacatctccaactgctgcgtcctga
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