Thiorhodovibrio litoralis: Thiosp_03604
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Entry
Thiosp_03604 CDS
T09560
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
tlr
Thiorhodovibrio litoralis
Brite
KEGG Orthology (KO) [BR:
tlr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tlr03032
]
Thiosp_03604 (topA)
03400 DNA repair and recombination proteins [BR:
tlr03400
]
Thiosp_03604 (topA)
Enzymes [BR:
tlr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Thiosp_03604 (topA)
DNA replication proteins [BR:
tlr03032
]
Prokaryotic type
DNA Topoisomerases
Thiosp_03604 (topA)
DNA repair and recombination proteins [BR:
tlr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Thiosp_03604 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_8
Toprim_4
DUF1272
Motif
Other DBs
NCBI-ProteinID:
WPL13787
LinkDB
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Position
complement(3937256..3939670)
Genome browser
AA seq
804 aa
AA seq
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MNLVIVESPAKAKTIEKYLGKEFEVLASYGHVRDLVPKEGAVDTEHGFEMKYQVIERNEK
HVQAIAKKLKNADALYLATDPDREGEAISWHLYELLKKRRQIGKRPVYRVVFNEITKNAV
QDAVANPRELSVDLVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLICER
ENEIEAFVSREYWSVDADVAKPEAAKEPKPFSAKLVELGGEKVEQFSIVNGEQAADAEKR
IADAAQGKLHVDQVERKQRKRNPAPPFITSTLQQEAARKLGFTAQRTMRVAQQLYEGVDL
GGEAVGLITYMRTDSVNLAQEALDEIRAYVTERYDTKHLPDKPRLFKTKAKNAQEAHEAV
RPTSILREPKAVRAHLSSEQFRLYELVWKRTLACQMAHALINQVAIVLSAGRPDAPEGIR
FRATGSTVAEPGFMRVYLEGRDDSKQAEDDEERMLPALEEGELVDLLAIRPEQHFTEPPP
RYSEASLVKALEEFGIGRPSTYASIISTLQDREYVTLDNKRFMPSDVGRVVNKFLTAHFT
SYVDYDFTARLEDSLDAVSRGEGDWIPVLEQFWKAFKERVDYTQENVQRSEVTQEAIDEK
CPECGGQLSKRLGRNGLFIGCTNYPECSYTRDLHQDGDAAAKEPEIVEGRTCPDCGSPLE
IKRGRYGKFIGCSGYPKCRHIEPLEKPEDTGVACPKCNKGSLQKKRSRRGKVFYSCSTYP
KCDYAVWNEPLAQPCPQCSWPVLTLKVTKSKGAQFACPQKECGYVAAADEANLDNADAEQ
SSSAPETGGASRANKTQQTAEVDG
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgaatctggtcatcgtcgaatcccccgccaaagccaagacgatcgagaaatatctcggc
aaggaatttgaggtcctggcctcctacggccatgtgcgcgacctggtgcccaaggagggc
gcggtcgataccgagcatggctttgagatgaagtaccaggtcatcgagcgcaacgagaag
cacgtccaggccatcgccaaaaagctcaagaatgccgatgcgctctatctcgcaactgac
ccggaccgcgaaggcgaggcgatttcctggcatctgtatgagctgctgaaaaagcgccgc
cagattggaaagcgcccggtctaccgcgtggttttcaacgagattaccaagaacgcggtg
caggacgcggtggccaacccgcgcgagctgtcggtcgatttggtcaatgcccagcaggct
cggcgcgcgctcgattatctggtcggcttcaacctctcgccgctgctgtggaagaagatc
cgtcgcggtctgtctgccgggcgcgtgcagagcccggcgctgcggttgatttgcgagcgt
gagaacgagatcgaggccttcgtcagtcgcgagtattggagcgtcgatgccgatgtggcc
aagcccgaggcagccaaggagcccaaacccttcagcgccaagctggtggagttgggcggg
gagaaggtcgagcagttcagtatcgtcaatggcgagcaggcggcggatgccgaaaagcgc
atcgccgatgcggcccaaggcaagctgcatgtcgatcaggtcgagcgcaagcagcgcaag
cgcaacccggcgccgccctttattacctcaaccttgcagcaggaggcagcgcgcaagctc
ggcttcaccgcgcaacgcaccatgcgcgtcgctcagcaattgtacgagggtgtcgatctg
ggcggtgaggccgtgggtctgatcacctacatgcgtaccgactcggtcaatcttgcgcaa
gaggcgctggatgaaatccgggcttacgttaccgaacgctacgacaccaaacatctgccc
gataagccgcgcctgtttaagaccaaggcaaagaacgcccaggaggcgcacgaggcggtg
cgccccacgtccatcttgcgtgagcccaaggcggtgcgcgcgcatctgagctccgagcaa
ttccgcctgtacgaactggtctggaagcgcaccctggcctgccagatggcgcatgcgctg
atcaatcaggtggctattgtgctgagcgccggcaggcccgacgcgcccgaggggattcgc
ttccgcgccaccggctcgaccgtcgccgagcccggcttcatgcgcgtctatctcgaaggc
cgtgatgacagcaagcaggccgaggatgacgaagaacgcatgttgccggcgctcgaggaa
ggcgaactggtcgatctgctggcaatacgccccgagcagcacttcaccgagccgccgccg
cgctactcggaggcatccttggtcaaggcgctggaggaattcggcatcgggcggccgtcg
acctatgcctcgattatctccacattgcaggatcgcgagtatgtgacgctcgataacaag
cgcttcatgccgagcgatgtggggcgggtggtcaacaagttcctcaccgcgcatttcacc
tcctatgtggattacgacttcaccgcccggcttgaggactccctcgatgccgtctcgcgc
ggggagggcgactggattccggtgcttgagcagttctggaaggcgttcaaggagcgggtg
gattacacccaggaaaacgtccagcgcagtgaggtgacccaggaggccatcgacgagaaa
tgccccgagtgcggagggcagctgtccaagcgcctcggccgcaacgggctctttattggc
tgcaccaactacccggagtgcagctacacccgcgatctgcatcaggacggcgacgcggcg
gccaaggagccggagatcgtcgaggggcgcacctgccccgactgtggttcgcccttggaa
atcaagcgcgggcgttacggcaagttcatcggctgcagcggctaccccaagtgccgccat
atcgagccgctggagaagcccgaggatacgggggtcgcctgccccaagtgcaacaagggc
agcttgcagaagaaacgctcgcgtcgcggcaaggtgttctactcttgctccacctatcca
aaatgcgactacgcggtctggaacgagcccctggcccagccctgcccgcagtgcagctgg
ccggtgctgacgctcaaggtgaccaagtccaagggcgcccagtttgcttgcccgcaaaag
gaatgcggctatgtggcggcggcggatgaagcgaacttggacaatgctgatgctgagcaa
tcaagcagcgcgccagagacgggcggggccagtcgtgccaacaagacccaacagacggcc
gaggtcgacggctga
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