Thiorhodovibrio litoralis: Thiosp_04531
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Entry
Thiosp_04531 CDS
T09560
Symbol
lgrB
Name
(GenBank) Linear gramicidin synthase subunit B
Organism
tlr
Thiorhodovibrio litoralis
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Condensation
AMP-binding
PP-binding
AMP-binding_C
Spore_YhcN_YlaJ
Motif
Other DBs
NCBI-ProteinID:
WPL14676
LinkDB
All DBs
Position
complement(4915263..4923026)
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AA seq
2587 aa
AA seq
DB search
MSSRNPSKDLSGGVSGISEEARSDKESGERGLTYALSPLQEGMLIHSLADEGVGMYVSQG
VHLLNQIDHWALEQAWQQVVDRHEVLRTSFLWEGLDRPLQIVNPKVEVRIEKRSLAHLSR
WEQKIELRSILSQDRQQGYNLARPPLFRLFLIKRSSESDFLVFSHHHLLLDGWSNPILLE
EVRACYRAILRGTTANLLPPRPFRVFIGWLESQSPEGERRFWQNYLKDFREPTPLPYDLG
AGRQAGYPLKSEEWPLEIKGTEFERLREMARRSQVSLNTVIQAAWVLLLSRYSARETVVF
GSLVSGRSPVLTGIERMVGMFLNTLPMLVRVDDAAPLSDWLKYVQKQQTALSEHQHSPLA
QIQRWSEVPRGSLLFESVIDINNTHQPEEDSAEEGEDSVMAPINQSMPLLLFAKPALNRL
VLILVYNNRRFTRGSAGQLGEQFVTLLKSMSEGLEMPVGQLSMVSKEESRRTLVSWNQTH
TQYPAHMALHQLFEQHAASTPDAPAVHYLDQSYSYGIFNQKANQFAHYLISIGVGRGQLV
AFCLDRSFDMVVTLLAILKAGAAYVPLDPNYPLDRLKLMLESSGASLLVSQEKWAQQFKD
MVSRIICFDLEANTWSAKPVTNPDLTLSPEDLAYVLYTSGSTGIPKGIMIPHRVPVNRMF
IEPHSFASDEALCAKTSICFVDSGWELWSAWSNGLPLTLIPDDQVKDPAKLVDALAESGS
TRMVLVPSLLRSMLDTAPDLGERLPRMRHWICSGEALPGDLSARFVAAMPDAVLTNLYGA
TEIWDVTRCDTTEDLPYDPMSIGRIMGNMQGYVLDEALRPVPVGIVGELYFSGEHVAHGY
WEKPKLTAQAFLPNPFSSTPGSRMYKTGDLGRWLPDGNFEYLGRIDQQVQLRGLRIELEE
IESVIRQHAQIAQAAVVVSEDQRLVAYIVTTGEVPPLAAELRKHVRQKLPEHMTPAFYLP
LESIPLTPNGKTDRRALPKPKVTEMARIIEKETVSRAPDTPTEKSVAAVWARFLGLGEVG
AESDFFQLGGESLMAVRIITELGKRYGLSIPFSVLMKARTVTDMAAWIDACLASGIPDLA
LSQPDLTKIEHGKKAPLSYSQQQMWLIDQLNPGSVSYTLPCVIHFGCKVDRSALDRALTL
LVERHETLRTSFSAIDGEPFQVIAEAQPVTIPFEDLTELPREVRQDLVERKLREQTRIPW
DLEAGPVLRYQLIKSEEDVFTLSMTLHHIAADGRSMAIMSHEINELYVAASQDRPARLPP
LSIQYADYAIWQRDWMQGEQIAAHIEYWKTQLEEVSVLEIPSDYPRPEAQGYRGGQVSVW
LEEDLLQGLRDIAIEQGATMFMVLLAAFKVLLARHSGQDDICVGTPTENRAQPHLERLIG
YFVNTIVIRSRVRGQQSFREFIEEVRSTCLDAYDHQEVPFERLVERLGVHRDLGHNPLFQ
VLFVHQKIERELGFGNALTRQLAPEQETANFDLVLNAQEREDRLELKLIFNADLFSRASI
ERMGAHLKRLIRFAVSEPDRALHNAPMLLPKERHRIVREFSQSGLGEKTTRCAHELISEH
AVVRPCQIAIRLGGEALSYRELDQRANQIAHRLREHGVGPEIVVGWFGERSLATFIGLLG
IMKSGGAFLPIDPSLPPERIAYILQDANVSLAVTQPELAERVPDGCDRLILDQLASADSA
QSMTPPPVAIDSKNLAYVIYTSGSTGLPKGVMVQHGNLANVIRAQIPLFKIDHESQVLQT
LSLSFDAAIGEIFRTLVAGATLNLAHQDALMPGPLLIDTLKRQHISALTLSAAALEAMPR
VSGELSELKGLTVGGDSLDPDLASHWQKNRHFMNGYGPTETTIGATLAWGWSAGGKPPLG
RPLPNVETYVLDSCMRPVPVGTPGELYIGGIGVSRGYLDRPGQTAAAFVPHPFSDQPGER
LYRTGDLVRWLPDGQLDFLGRLDHQVKIRGYRIELSEIETVLKRHPEVDQAVVVVHRSEG
VSRLAGYVTSVDKTQPDIDGLRRYLRSTLPDYMVPAFLVPCDAFPMTTSGKIDRNALPLP
TASELQSEDAYVEPETDLEKLIADVWQDVLGLEKVGIHSNYFELGGDSIMSIRVVARLTE
AGHPLSLQEMFKHQTVAELAAVLGAGTVAIEAEQGLVGGDVPLTPVQRWFFEQESRKPAY
FNQWMVIPTPTALDRTKMEEAIRAVSAHHDALRMRYRQDSQGAWQQFNSLDIDSVPFSTV
DLSALPKPDWAARIDETFAHLNGSLDLQRGPIFKVCWFNAGSNQEGRLLLIVHHLVMDIV
SWSPFVEDLMTVYRQLASVQTPRLPLKTNSFKEWAQALVDFANSPAAMADVSYWTRALER
QPLPVDFPGSDHSLSTTSSIFGELSAAKTQRLIERAPVIFESRLSHLLLAGLAIGFSEWT
ENAVIHIKIEGQGREPVGTDLNLSRSLGWFTSFYPVTLTIESSQNLVHRIKAALETVESI
PARGISYSALRYLSTDENVRQAMLAIPEPDVTFNFAGQTDAADTPRDERSHVHAEWGALA
ETGKIQLAESDEGTRRHLIEIGAGIIKGKLVFRFAFGQKRFKKESIQGLCDSVIGVLERL
VDISVSQ
NT seq
7764 nt
NT seq
+upstream
nt +downstream
nt
atgagtagccggaatcctagcaaagatttaagtggcggtgtatcaggcatctcggaagag
gcacgtagtgacaaagagtcaggcgagcgcgggcttacctacgcactctcgcccttacag
gaagggatgcttattcattccctggccgacgagggcgtggggatgtacgtttcccaaggc
gttcatctgctcaatcagattgaccattgggcgttggagcaagcatggcaacaggtggtt
gatcgacatgaagtgctgcgtacatcttttctctgggaggggttggatcggccgttacaa
attgtcaatccaaaggtcgaggttcggattgagaagcggagcttggcgcatttgtcgcgt
tgggagcaaaagatcgaactgcgtagcattctcagccaggatcggcaacagggctacaat
ctagcccggccgccgcttttccgtttgttcctgataaagcgatcgtcggagtctgatttt
ctcgtattcagtcatcatcatctactgctcgacggttggtcgaacccgattctcctggaa
gaggtgcgagcctgctaccgtgcgattctgcgcgggaccacagcgaatctcctgccgcct
cgcccgtttcgtgttttcattgggtggttggagagtcaatcacctgagggcgagagacgt
ttttggcaaaactacctgaaagattttcgtgagcccacgccgctgccttacgatctcggt
gccgggcggcaggccggttacccgcttaagtccgaagagtggcccctagaaatcaagggc
actgagtttgaacggctgagggaaatggcgaggcgcagtcaggtatcgctcaataccgtg
attcaggcggcctgggttttgctactaagtcgatacagtgcacgagagactgtagtcttc
ggttctctggtgtctggccggtcgcctgttttaacggggatcgagaggatggtggggatg
tttctcaatacactgccgatgcttgtaagggtagatgatgcagcgcctttaagtgattgg
ctgaagtatgtgcaaaaacagcaaactgcgctgagcgagcatcagcacagcccacttgct
cagatccaacgctggagcgaagtgcctcgtggaagtctgttgttcgagtcggtcatcgac
ataaataacacgcatcagcctgaggaggatagtgcggaggaaggcgaagatagtgtgatg
gcaccaatcaaccaaagcatgccgcttttgttgtttgcgaagcctgcgttgaatcgcttg
gtattgatccttgtctacaacaaccgtcgctttaccagaggcagcgcgggacaattaggc
gagcaatttgtgacgctcctgaaatccatgtcagagggcctggagatgcctgttggacag
ctttcgatggtgtccaaggaagagtcgaggcgcacactggtgtcatggaaccaaacgcac
acccaatacccagcgcacatggccctgcatcagttgttcgagcagcacgcagcatccact
ccagatgcacctgctgttcactacctagatcaatcctacagctatggcattttcaatcag
aaagcgaatcaatttgcgcattacttgatttcaatcggtgttgggcgggggcagttggta
gcattctgcctggaccgttcgttcgacatggtggtcaccttgttggccattttaaaagcg
ggcgctgcttatgtgccacttgatccaaattatcccctcgatcgcttgaaactgatgctg
gagagctcaggcgcgtcgctgctcgtcagtcaggaaaaatgggcgcagcagtttaaggac
atggtatcgcgaattatttgtttcgacctcgaagcgaatacgtggtccgctaagccagta
accaatccagatctgacgctaagccctgaagatcttgcctatgtgctctacacatcggga
tcaactggaataccgaaaggaattatgatcccgcatcgtgtgccggttaatcgcatgttc
atcgagccgcactcttttgcgtcggatgaggcactctgcgcaaagacttccatctgtttc
gtcgactcagggtgggaactttggagcgcctggagtaatggcttgccactcaccctgatc
cctgatgaccaggtcaaagacccggcaaaactcgttgatgcgctagcggagtcgggttcg
acacgcatggtattggtgccttcattgctgcgctcgatgctcgataccgcgcccgacctc
ggcgagcggctgccacgcatgcgccactggatctgcagcggcgaagcgctgcctggggat
ctgtccgcgcgcttcgtcgcagcaatgccagatgctgttctgacgaatttgtacggagct
acggagatctgggatgttacccgttgcgacaccacagaagatcttccttacgatccgatg
tcgattggccggatcatgggaaatatgcagggctacgtgctggacgaggctttgcgcccg
gttccggttggaattgtcggcgagctgtatttttccggcgagcatgtcgcgcatggctac
tgggaaaaaccgaagctgaccgcgcaggcatttcttcccaacccgttcagctcgactccc
ggaagccgtatgtacaaaaccggtgatcttggacgctggctgccggatggcaattttgag
tacctggggcggattgatcagcaagttcagttgcggggtctgagaattgagctggaggag
atcgaaagtgtgattcgacagcacgcgcaaattgctcaggctgctgtcgtggtttcagaa
gaccaacgtctggttgcttatattgtcacaaccggtgaagttcctccgcttgccgctgaa
ttgcgcaagcatgttcgccaaaagctgccagagcacatgactcccgcattctatctgcct
cttgagagtatcccgttaactccgaatggaaagaccgatcgccgggccttgcctaagccc
aaagttacggagatggctcgaattatcgagaaggagacggtgtcgcgtgcaccggatacg
ccgacagaaaagtccgtagcagcggtttgggctcgctttctcggtctcggtgaagtcgga
gcggaatcggatttctttcagcttggcggcgaatccttaatggcagttcgcattatcacc
gagctgggtaagcgctacgggctgtcgattcccttcagtgtcctgatgaaggcgcgaacc
gtgacggacatggcggcgtggatcgacgcatgtctcgcctctggtatcccggatcttgcg
ttgtcgcagcctgatttgaccaagatcgagcatggaaaaaaggcgcctctgtcctattcc
cagcaacagatgtggttgattgatcagctcaacccgggaagcgtgtcttatactcttccc
tgcgttatccacttcggttgcaaagttgaccgctcggcgctcgatagagcattgacgctg
ctggttgagcgccatgaaactctgcggacaagtttttccgccattgatggcgagcctttt
caggttatcgcggaggctcagcctgtcacgattcctttcgaggatcttaccgagttgcct
cgcgaagtcaggcaggatttggtcgagcgaaagcttcgtgagcagacccgtatcccgtgg
gacctggaggcggggccagtgctccgttatcagttgattaaaagcgaagaggatgtcttt
accctgtcgatgacgcttcaccatattgccgcggatggccgttcgatggcaattatgtcg
cacgagataaacgaactctacgtcgctgccagtcaggatcgtcccgcgcgattaccgccg
ctgtcaatccaatatgctgattatgcaatttggcaacgcgactggatgcagggagaacag
atcgcggcgcacattgagtattggaagacccagctcgaagaagtcagtgttctggagatt
ccaagtgattatccgcgaccagaggcgcaaggttatcgcggcggtcaagttagcgtctgg
cttgaggaagacttactacaaggcttgcgggatatcgcgattgaacaaggcgccacgatg
ttcatggtgttattggccgcgttcaaggtgcttttagcgcgccactcagggcaagacgat
atctgcgttggtaccccgactgaaaaccgtgctcagccgcatctcgagcgtctgatcggg
tattttgtaaacaccatcgtcatccgcagtcgagttagagggcagcaaagtttccgcgag
ttcatcgaggaagttcgtagcacctgtcttgatgcctacgatcatcaggaggtgccattt
gagcgactggtggagcgcctcggtgtgcatcgcgatcttggccataatccattattccag
gtgctgtttgttcatcaaaaaatcgagcgggaactaggttttggcaacgcactaacgcgc
cagcttgcaccggagcaggagacggcaaatttcgacctggtgctcaatgcccaggaacgg
gaagatcgcctcgagctcaaactgattttcaatgccgacctgttctcgcgagcatctatc
gaacgcatgggtgctcatttgaaacgactcattcgcttcgctgttagcgagccggaccga
gcgttgcataatgcgcccatgctgcttccgaaagagcgtcaccgcattgtccgcgagttc
agtcagtcagggctaggtgaaaaaacaacgcgctgcgcgcatgagttgatctccgagcac
gccgtcgttcggccttgccagattgccatccgccttggcggagaggctttgagctaccgc
gaactcgaccagcgcgccaaccagattgcgcatcgcttgcgcgaacatggcgttggcccg
gagatagtcgtcgggtggtttggcgagcgctccttggcaacattcattggattgctcggc
attatgaagtctgggggcgctttcctgcctatcgacccgagtcttccgccggagcggata
gcctatatcctccaggatgcaaatgtctctctggccgtgacccaacccgagctggccgag
agagttccggacgggtgcgatcggctaatccttgatcagctcgccagtgctgactcggca
cagtcaatgacaccgccgccggtagccattgattctaagaatctcgcctatgtcatctac
acttctggttcgacagggctaccaaaaggggtgatggtgcagcatggcaatctggccaat
gtgattcgtgcgcagattcctctgttcaaaatcgaccatgaaagccaggttctacagacg
ctctcgctaagtttcgatgcagccatcggcgaaatctttcgcaccttggtagccggagca
actctgaatcttgcccaccaagacgcattgatgccaggtccgctgctcatcgacacgttg
aagaggcaacatatcagcgctttgacgctctccgcagccgcgttggaggctatgccgagg
gtgtctggggagctttccgaactgaaaggcctcactgttggcggagacagcttagacccg
gatttggccagtcactggcaaaaaaaccgccacttcatgaacggctacggtccgaccgaa
acgaccatcggcgccactcttgcatggggctggagtgcgggcggcaagccgccgttggga
cgcccgttgccgaacgttgagacctatgttcttgactcttgcatgcgacccgttcctgtc
gggacgccgggcgagctatacatcggtgggataggcgtgagccgcggttacctggaccgg
cccggtcagaccgctgcggcttttgtcccccatccgttttccgatcaacccggggagcgc
ctttatcgcacaggcgacctggtccggtggcttcctgatggacagctggattttttgggg
cgcttggatcatcaggtaaagattcgtggctatcgtatcgagctcagtgagatcgagact
gtcttaaagcgtcatcccgaagtcgatcaagcggttgtggtggtgcatcgcagcgaaggg
gtcagtcgactcgcaggctacgtcacctcggtggataaaacccagcccgacatcgatggg
ctgcgccgatacctaagaagtaccctgccggattatatggtccctgcttttctggtgccg
tgcgacgcatttccgatgacgacgagtggcaaaattgaccgcaacgccttgccgctgccc
actgcaagcgagctgcaatccgaggatgcctatgttgagcccgaaactgatctcgaaaaa
ttgattgcagacgtctggcaggacgtccttggcctggaaaaggttggaattcactcgaac
tatttcgagctaggcggcgactcaatcatgagcatccgcgttgttgctcgactcaccgag
gccggtcatccattgtccttgcaggaaatgttcaagcatcagaccgtcgccgagcttgcc
gctgttctaggcgctggcacagttgccattgaggctgaacagggcttggtgggcggagat
gtgccgctgacgcccgttcagcgctggtttttcgaacaagaaagcagaaaaccggcctat
ttcaatcaatggatggtgatcccgacacctacagcactggaccgcaccaagatggaagag
gccattcgtgcggtcagcgcgcatcatgatgccttgcgtatgcggtatcgccaagatagc
cagggcgcttggcagcaatttaactctttggatatcgattctgttcctttcagcacggtt
gacctctcagcattgccaaaacctgattgggcagcgcggattgacgagaccttcgcgcat
ttgaacggctcgctcgatcttcaacgcggaccaattttcaaagtatgctggtttaacgcc
gggtctaaccaggaagggcgtttactcctgatcgtgcatcatcttgtgatggatatcgta
tcctggtcgcccttcgtagaagacttaatgactgtctatcggcagcttgctagcgttcaa
acgccgcgcttacctttaaagacaaactctttcaaggaatgggcgcaggccttggtggac
tttgcaaactcaccagcggcgatggctgatgtgtcctattggacgcgcgcgcttgagcga
caaccactcccggtagatttcccgggctcggaccactcactatcgacgacatcttcgatt
tttggcgaattgtcagctgcgaaaactcagaggctaatcgagcgggctccggtaatcttt
gaaagccggctaagccatctgttactggcaggacttgcgatcgggttcagtgagtggact
gaaaacgcagtcatccacatcaagattgaaggccaagggcgtgagcctgttggtaccgac
ttaaacctttcgcgttcgctcggttggttcacgagtttttatcctgtgactcttaccatt
gaatcatcccagaatcttgttcataggataaaagcggcacttgagaccgtcgaaagtatt
cctgctcggggcattagctattcagcattgcgctacttgagcacggatgaaaatgtcagg
caggcaatgctagcgattccggagcctgacgtgacattcaacttcgcagggcagaccgat
gctgcggatacgccgcgggacgaacggtctcatgtgcatgcggagtggggcgcgctagcg
gaaaccggcaaaatacaactggctgagtctgatgaaggaacgcgcaggcacctcatagag
atcggcgctggaatcattaaaggcaagctggtctttcgtttcgcttttggccaaaaacgc
ttcaagaaagaaagcatccagggactctgcgattccgtgatcggggttttagagcgcttg
gtcgatatttccgtctctcaatga
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integrated database retrieval system
